Variant report

Variant	rs11963667
Chromosome Location	chr6:149569038-149569039
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs57725287	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62425952	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62428470	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024776	chr6:149398652-149654593	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149563200-149569800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:149563600-149569800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:149567000-149570200	Enhancers	Primary B cells from cord blood	blood
4	chr6:149567200-149571000	Enhancers	Primary B cells from peripheral blood	blood
5	chr6:149567600-149569800	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr6:149567600-149570200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr6:149568000-149570800	Enhancers	Primary T cells from cord blood	blood
8	chr6:149568200-149570400	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr6:149568400-149569200	Enhancers	GM12878-XiMat	blood
10	chr6:149568400-149569600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr6:149568400-149569800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr6:149568400-149569800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr6:149568400-149569800	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr6:149568400-149575200	Weak transcription	Spleen	Spleen
15	chr6:149568600-149569600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr6:149568600-149569600	Weak transcription	Primary T helper cells PMA-I stimulated	--
17	chr6:149568600-149569600	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr6:149568600-149569800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr6:149568600-149569800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr6:149568600-149569800	Weak transcription	Placenta	Placenta
21	chr6:149568600-149569800	Weak transcription	Fetal Thymus	thymus
22	chr6:149568600-149569800	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr6:149568800-149569200	Weak transcription	Primary T cells fromperipheralblood	blood
24	chr6:149568800-149569800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr6:149568800-149569800	Weak transcription	Adipose Nuclei	Adipose
26	chr6:149568800-149569800	Weak transcription	K562	blood
27	chr6:149568800-149570000	Weak transcription	Primary hematopoietic stem cells	blood
28	chr6:149568800-149581200	Weak transcription	Right Atrium	heart
29	chr6:149569000-149569800	Enhancers	Monocytes-CD14+_RO01746	blood
30	chr6:149569000-149570400	Weak transcription	Brain Hippocampus Middle	brain

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