Variant report

Variant	rs57725287
Chromosome Location	chr6:149569815-149569816
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11963667	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11968300	0.87[ASN][1000 genomes]
rs12526921	0.89[ASN][1000 genomes]
rs62425952	0.82[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs62428470	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024776	chr6:149398652-149654593	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149567000-149570200	Enhancers	Primary B cells from cord blood	blood
2	chr6:149567200-149571000	Enhancers	Primary B cells from peripheral blood	blood
3	chr6:149567600-149570200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr6:149568000-149570800	Enhancers	Primary T cells from cord blood	blood
5	chr6:149568200-149570400	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr6:149568400-149575200	Weak transcription	Spleen	Spleen
7	chr6:149568800-149570000	Weak transcription	Primary hematopoietic stem cells	blood
8	chr6:149568800-149581200	Weak transcription	Right Atrium	heart
9	chr6:149569000-149570400	Weak transcription	Brain Hippocampus Middle	brain
10	chr6:149569200-149571000	Enhancers	Primary T cells fromperipheralblood	blood
11	chr6:149569600-149570600	Enhancers	GM12878-XiMat	blood
12	chr6:149569600-149570800	Enhancers	Primary T helper naive cells from peripheral blood	blood
13	chr6:149569600-149570800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
14	chr6:149569600-149570800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
15	chr6:149569600-149570800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
16	chr6:149569600-149571000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
17	chr6:149569600-149571000	Enhancers	Primary T helper cells fromperipheralblood	blood
18	chr6:149569600-149571200	Enhancers	Primary T helper cells PMA-I stimulated	--
19	chr6:149569800-149570000	Enhancers	Brain Cingulate Gyrus	brain
20	chr6:149569800-149570000	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
21	chr6:149569800-149570200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr6:149569800-149570200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr6:149569800-149570200	Enhancers	Fetal Lung	lung
24	chr6:149569800-149570200	Enhancers	Placenta	Placenta
25	chr6:149569800-149570200	Bivalent Enhancer	HepG2	liver
26	chr6:149569800-149570400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr6:149569800-149570600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr6:149569800-149570600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
29	chr6:149569800-149570600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr6:149569800-149570600	Enhancers	Adipose Nuclei	Adipose
31	chr6:149569800-149570600	Enhancers	Fetal Intestine Small	intestine
32	chr6:149569800-149570600	Enhancers	Fetal Thymus	thymus
33	chr6:149569800-149570800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
34	chr6:149569800-149570800	Enhancers	Rectal Mucosa Donor 29	rectum
35	chr6:149569800-149570800	Enhancers	K562	blood
36	chr6:149569800-149571000	Enhancers	Primary T killer memory cells from peripheral blood	blood
37	chr6:149569800-149571000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr6:149569800-149571000	Enhancers	Colonic Mucosa	Colon
39	chr6:149569800-149571000	Enhancers	Fetal Intestine Large	intestine
40	chr6:149569800-149571000	Enhancers	Hela-S3	cervix
41	chr6:149569800-149571200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr6:149569800-149571200	Enhancers	Primary hematopoietic stem cells short term culture	blood
43	chr6:149569800-149571200	Enhancers	Rectal Mucosa Donor 31	rectum
44	chr6:149569800-149571400	Enhancers	Sigmoid Colon	Sigmoid Colon
45	chr6:149569800-149571400	Enhancers	Stomach Mucosa	stomach
46	chr6:149569800-149571600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
47	chr6:149569800-149572600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

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