Variant report

Variant	rs11968300
Chromosome Location	chr6:149580983-149580984
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12526921	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2121348	0.84[AFR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs57725287	0.87[ASN][1000 genomes]
rs9485372	0.97[GIH][hapmap]
rs9498293	0.86[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024776	chr6:149398652-149654593	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149568800-149581200	Weak transcription	Right Atrium	heart
2	chr6:149570800-149581600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr6:149570800-149581600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr6:149571000-149582200	Weak transcription	Primary B cells from peripheral blood	blood
5	chr6:149575000-149583000	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr6:149575400-149589200	Weak transcription	Spleen	Spleen
7	chr6:149575600-149581200	Weak transcription	Fetal Thymus	thymus
8	chr6:149575800-149582600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:149577200-149581200	Weak transcription	Fetal Brain Male	brain
10	chr6:149578000-149581000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr6:149578000-149581200	Enhancers	Monocytes-CD14+_RO01746	blood
12	chr6:149578600-149581800	Weak transcription	Primary T cells from cord blood	blood
13	chr6:149579600-149581600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr6:149579800-149581200	Enhancers	Fetal Heart	heart
15	chr6:149579800-149581600	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr6:149580000-149582800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr6:149580400-149582000	Weak transcription	Primary T helper cells PMA-I stimulated	--
18	chr6:149580400-149582200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr6:149580600-149581800	Enhancers	Primary neutrophils fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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