Variant report

Variant	rs2121348
Chromosome Location	chr6:149595505-149595506
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:149591367..149593553-chr6:149594153..149597029,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11965411	0.85[CEU][hapmap];0.91[CHB][hapmap];0.92[JPT][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11968300	0.84[AFR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12526921	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35570061	0.97[ASN][1000 genomes]
rs4895780	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4895782	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4895783	0.91[CHB][hapmap];0.83[JPT][hapmap];0.90[ASN][1000 genomes]
rs4895784	0.86[ASN][1000 genomes]
rs4895785	0.88[ASN][1000 genomes]
rs4895786	0.90[ASN][1000 genomes]
rs4897107	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4897108	0.96[ASN][1000 genomes]
rs4897112	0.85[CEU][hapmap];0.91[CHB][hapmap];0.92[JPT][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4897113	0.85[CEU][hapmap];0.91[CHB][hapmap];0.92[JPT][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4897114	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55687017	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56756008	0.84[ASN][1000 genomes]
rs57671746	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58489510	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59574684	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60115501	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62428484	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6914987	0.86[ASN][1000 genomes]
rs9485370	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9485371	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9485372	0.84[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9485373	0.84[CEU][hapmap];0.87[CHB][hapmap];0.82[JPT][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9498283	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9498286	0.90[CHB][hapmap];0.86[JPT][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9498287	0.85[CEU][hapmap];0.91[CHB][hapmap];0.92[JPT][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9498288	0.85[CEU][hapmap];0.91[CHB][hapmap];0.96[JPT][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9498290	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9498291	0.89[ASN][1000 genomes]
rs9498292	0.83[CHB][hapmap];0.90[ASN][1000 genomes]
rs9498293	0.91[CHB][hapmap];0.81[JPT][hapmap];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024776	chr6:149398652-149654593	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149586600-149597000	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr6:149591800-149595600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
3	chr6:149591800-149596600	Enhancers	Primary B cells from peripheral blood	blood
4	chr6:149592000-149596200	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr6:149592200-149596200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
6	chr6:149592600-149596200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr6:149592600-149596200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr6:149593400-149596200	Enhancers	Primary hematopoietic stem cells	blood
9	chr6:149594000-149596200	Enhancers	Primary B cells from cord blood	blood
10	chr6:149594800-149596000	Weak transcription	Spleen	Spleen
11	chr6:149595000-149596800	Enhancers	Primary neutrophils fromperipheralblood	blood

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