Variant report

Variant	rs35570061
Chromosome Location	chr6:149586560-149586561
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:149585876..149588526-chr6:149590777..149593659,3	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11965411	0.88[ASN][1000 genomes]
rs2121348	0.97[ASN][1000 genomes]
rs4895780	0.83[ASN][1000 genomes]
rs4895782	0.82[ASN][1000 genomes]
rs4895783	0.86[ASN][1000 genomes]
rs4895784	0.83[ASN][1000 genomes]
rs4895785	0.85[ASN][1000 genomes]
rs4895786	0.86[ASN][1000 genomes]
rs4897107	0.91[ASN][1000 genomes]
rs4897108	0.92[ASN][1000 genomes]
rs4897112	0.88[ASN][1000 genomes]
rs4897113	0.89[ASN][1000 genomes]
rs4897114	0.90[ASN][1000 genomes]
rs55687017	0.89[ASN][1000 genomes]
rs56756008	0.88[ASN][1000 genomes]
rs57671746	0.89[ASN][1000 genomes]
rs58489510	0.93[ASN][1000 genomes]
rs59574684	0.89[ASN][1000 genomes]
rs60115501	0.89[ASN][1000 genomes]
rs62428484	0.89[ASN][1000 genomes]
rs6914987	0.83[ASN][1000 genomes]
rs9485370	0.89[ASN][1000 genomes]
rs9485371	0.89[ASN][1000 genomes]
rs9485372	0.89[ASN][1000 genomes]
rs9485373	0.86[ASN][1000 genomes]
rs9498283	0.89[ASN][1000 genomes]
rs9498286	0.89[ASN][1000 genomes]
rs9498287	0.89[ASN][1000 genomes]
rs9498288	0.89[ASN][1000 genomes]
rs9498290	0.86[ASN][1000 genomes]
rs9498291	0.86[ASN][1000 genomes]
rs9498292	0.86[ASN][1000 genomes]
rs9498293	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024776	chr6:149398652-149654593	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149575400-149589200	Weak transcription	Spleen	Spleen
2	chr6:149581600-149586800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr6:149581600-149587200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
4	chr6:149582600-149586600	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr6:149583000-149586600	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr6:149584400-149587400	Enhancers	Primary T helper cells PMA-I stimulated	--
7	chr6:149584400-149587400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
8	chr6:149584600-149586800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr6:149584600-149587200	Enhancers	Primary T helper naive cells from peripheral blood	blood
10	chr6:149584600-149587800	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chr6:149584800-149586800	Enhancers	Primary T killer memory cells from peripheral blood	blood
12	chr6:149584800-149587000	Enhancers	Primary T cells fromperipheralblood	blood
13	chr6:149584800-149587000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
14	chr6:149584800-149588200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
15	chr6:149585000-149587200	Enhancers	Fetal Thymus	thymus
16	chr6:149585200-149587400	Enhancers	Primary T cells from cord blood	blood
17	chr6:149585400-149586600	Weak transcription	Primary B cells from peripheral blood	blood
18	chr6:149585400-149586800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
19	chr6:149585400-149586800	Enhancers	Dnd41	blood
20	chr6:149585800-149586600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr6:149586400-149587000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr6:149586400-149592600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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