Variant report

Variant	rs11963686
Chromosome Location	chr6:44533164-44533165
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:44532570..44534270-chr6:44534486..44536425,2	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11961215	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1998404	0.85[AFR][1000 genomes]
rs6940697	0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527194	chr6:44523591-44534397	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44527600-44535400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:44529800-44535000	Weak transcription	Primary hematopoietic stem cells	blood
3	chr6:44530000-44535200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr6:44530000-44537600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr6:44530200-44535000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr6:44531400-44536600	Weak transcription	Right Atrium	heart
7	chr6:44531400-44536800	Weak transcription	Left Ventricle	heart
8	chr6:44531400-44537000	Weak transcription	Ovary	ovary
9	chr6:44531600-44536800	Weak transcription	Right Ventricle	heart
10	chr6:44531600-44537200	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr6:44532000-44534400	Weak transcription	Pancreas	Pancrea
12	chr6:44532000-44537000	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr6:44532200-44535000	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr6:44532600-44533200	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr6:44532600-44533200	Enhancers	Spleen	Spleen
16	chr6:44532600-44533400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
17	chr6:44532600-44533400	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr6:44532600-44537400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr6:44532600-44537400	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr6:44532800-44533200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr6:44532800-44533200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr6:44532800-44533200	Bivalent Enhancer	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr6:44532800-44533200	Enhancers	HSMM	muscle
24	chr6:44532800-44533400	Enhancers	HSMMtube	muscle
25	chr6:44533000-44536800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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