Variant report

Variant	rs1998404
Chromosome Location	chr6:44531258-44531259
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11963686	0.85[AFR][1000 genomes]
rs59843538	1.00[AMR][1000 genomes]
rs6915827	1.00[AMR][1000 genomes]
rs73734118	1.00[AMR][1000 genomes]
rs73737007	1.00[AMR][1000 genomes]
rs73737011	1.00[AMR][1000 genomes]
rs73737013	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527194	chr6:44523591-44534397	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44527600-44535400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:44528000-44532600	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr6:44529200-44531400	Weak transcription	Brain Substantia Nigra	brain
4	chr6:44529400-44532800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr6:44529800-44535000	Weak transcription	Primary hematopoietic stem cells	blood
6	chr6:44530000-44531600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr6:44530000-44532200	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr6:44530000-44535200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr6:44530000-44537600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr6:44530200-44535000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr6:44530800-44531800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr6:44531000-44531400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr6:44531000-44531400	Enhancers	Ovary	ovary
14	chr6:44531000-44531400	Enhancers	Right Atrium	heart
15	chr6:44531000-44531600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
16	chr6:44531000-44531600	Enhancers	Gastric	stomach
17	chr6:44531000-44531600	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr6:44531000-44532000	Enhancers	Skeletal Muscle Female	skeletal muscle
19	chr6:44531000-44532000	Enhancers	GM12878-XiMat	blood
20	chr6:44531000-44532200	Enhancers	Primary monocytes fromperipheralblood	blood
21	chr6:44531200-44531400	Enhancers	Left Ventricle	heart
22	chr6:44531200-44531400	Enhancers	Pancreas	Pancrea
23	chr6:44531200-44531400	Bivalent Enhancer	HepG2	liver
24	chr6:44531200-44531600	Enhancers	Fetal Heart	heart
25	chr6:44531200-44531600	Enhancers	Fetal Muscle Leg	muscle
26	chr6:44531200-44531600	Enhancers	HSMMtube	muscle
27	chr6:44531200-44531800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
28	chr6:44531200-44532600	Enhancers	HUES6 Cell Line	embryonic stem cell

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