Variant report

Variant	rs59843538
Chromosome Location	chr6:44627673-44627674
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:44626747..44628827-chr6:44629868..44632805,3	K562	blood:
2	chr6:44627162..44628887-chr6:44792962..44795386,2	MCF-7	breast:
3	chr6:44627669..44630444-chr6:45384279..45386439,2	MCF-7	breast:
4	chr6:44626505..44628712-chr6:45390567..45392142,2	MCF-7	breast:
5	chr6:44625055..44628612-chr6:44632264..44634968,3	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CDC5L-6	chr6:44627292-44628996	ncRnaDb_ncrna_FR094569_1

No data

rs_ID	r²[population]
rs1998404	1.00[AMR][1000 genomes]
rs6915827	1.00[AMR][1000 genomes]
rs73734118	1.00[AMR][1000 genomes]
rs73737007	1.00[AMR][1000 genomes]
rs73737011	1.00[AMR][1000 genomes]
rs73737013	1.00[AMR][1000 genomes]

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44617200-44628200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:44619400-44628600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:44619600-44628800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr6:44620000-44628200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr6:44621600-44627800	Weak transcription	Esophagus	oesophagus
6	chr6:44623200-44628400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr6:44623400-44628800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr6:44623400-44628800	Weak transcription	HSMMtube	muscle
9	chr6:44623600-44628400	Weak transcription	HMEC	breast
10	chr6:44623600-44628600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr6:44623600-44628600	Weak transcription	NHEK	skin
12	chr6:44623600-44628800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr6:44623600-44629000	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr6:44623600-44629000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr6:44623600-44629000	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr6:44623600-44630400	Weak transcription	Fetal Lung	lung
17	chr6:44623800-44627800	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr6:44623800-44628200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr6:44623800-44628200	Weak transcription	Liver	Liver
20	chr6:44623800-44629000	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr6:44624000-44628200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr6:44624000-44628200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr6:44624200-44629000	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr6:44625400-44628200	Weak transcription	NH-A	brain
25	chr6:44625400-44628400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr6:44625400-44628800	Weak transcription	Placenta	Placenta
27	chr6:44625600-44628400	Weak transcription	Osteobl	bone
28	chr6:44625600-44630200	Weak transcription	Fetal Stomach	stomach
29	chr6:44625800-44631200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr6:44626800-44629200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr6:44626800-44636800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr6:44627000-44637400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr6:44627400-44629000	Weak transcription	Pancreas	Pancrea
34	chr6:44627400-44633200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr6:44627600-44636600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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