Variant report

Variant	rs11964168
Chromosome Location	chr6:118034457-118034458
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:118024968..118027166-chr6:118033467..118035256,2	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11153694	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11751090	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs11753297	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11754321	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11758954	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13197163	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13201254	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13202506	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs13206727	1.00[ASN][1000 genomes]
rs13217247	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34080821	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35282633	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35957877	1.00[ASN][1000 genomes]
rs36054472	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532050	chr6:117528154-118203005	ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv830786	chr6:118026955-118201660	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:117999000-118039800	Weak transcription	Gastric	stomach
2	chr6:117999000-118042000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:118009400-118039800	Weak transcription	Small Intestine	intestine
4	chr6:118012600-118039600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr6:118016600-118040000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr6:118017000-118040000	Weak transcription	Pancreas	Pancrea
7	chr6:118027400-118040000	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr6:118028000-118034600	Weak transcription	Osteobl	bone
9	chr6:118028200-118034600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr6:118028200-118034600	Weak transcription	Placenta	Placenta
11	chr6:118028200-118034600	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr6:118028200-118034800	Weak transcription	Primary T cells fromperipheralblood	blood
13	chr6:118028200-118034800	Weak transcription	Adipose Nuclei	Adipose
14	chr6:118028200-118038200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr6:118028200-118039800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr6:118028200-118041200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr6:118028400-118034600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr6:118028400-118035000	Weak transcription	Lung	lung
19	chr6:118028400-118035000	Weak transcription	K562	blood
20	chr6:118028400-118037400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr6:118028400-118038400	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr6:118028400-118039800	Weak transcription	Liver	Liver
23	chr6:118032800-118034600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr6:118032800-118034800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr6:118032800-118035000	Weak transcription	Fetal Stomach	stomach
26	chr6:118032800-118035000	Weak transcription	HSMM	muscle
27	chr6:118032800-118036600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr6:118033000-118034600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr6:118033000-118042000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr6:118033200-118034800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr6:118033200-118034800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr6:118033400-118035000	Weak transcription	HSMMtube	muscle
33	chr6:118033400-118042400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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