Variant report

Variant	rs11754321
Chromosome Location	chr6:118018880-118018881
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:118009698..118012288-chr6:118017550..118019835,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10484300	0.83[AFR][1000 genomes]
rs11153683	0.83[AFR][1000 genomes]
rs11153684	0.83[AFR][1000 genomes]
rs11153694	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11751090	0.83[ASN][1000 genomes]
rs11752432	0.83[AFR][1000 genomes]
rs11753297	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11754163	0.83[AFR][1000 genomes]
rs11754754	0.83[AFR][1000 genomes]
rs11755139	0.83[AFR][1000 genomes]
rs11756843	0.83[AFR][1000 genomes]
rs11758182	0.83[AFR][1000 genomes]
rs11758954	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11961026	0.83[AFR][1000 genomes]
rs11961502	0.83[AFR][1000 genomes]
rs11964168	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11964717	0.83[AFR][1000 genomes]
rs11965618	0.83[AFR][1000 genomes]
rs11967810	0.83[AFR][1000 genomes]
rs12464	0.83[AFR][1000 genomes]
rs12665046	0.83[AFR][1000 genomes]
rs12665080	0.83[AFR][1000 genomes]
rs13197163	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13197261	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13201254	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13202506	0.83[ASN][1000 genomes]
rs13206727	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13217247	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2301424	0.83[AFR][1000 genomes]
rs28787987	0.83[AFR][1000 genomes]
rs34080821	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35282633	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35957877	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs36054472	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57261661	0.83[AFR][1000 genomes]
rs59939954	0.83[AFR][1000 genomes]
rs9766138	0.83[AFR][1000 genomes]
rs9766317	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532050	chr6:117528154-118203005	ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:117998200-118025800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:117998200-118026400	Weak transcription	Esophagus	oesophagus
3	chr6:117998800-118023000	Weak transcription	HSMMtube	muscle
4	chr6:117999000-118039800	Weak transcription	Gastric	stomach
5	chr6:117999000-118042000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr6:117999200-118028200	Weak transcription	Hela-S3	cervix
7	chr6:117999200-118029600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr6:118000800-118029400	Weak transcription	Brain Cingulate Gyrus	brain
9	chr6:118001200-118027400	Weak transcription	Thymus	Thymus
10	chr6:118002600-118027600	Weak transcription	Brain Angular Gyrus	brain
11	chr6:118003000-118026800	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr6:118003800-118026600	Weak transcription	Lung	lung
13	chr6:118006000-118026600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr6:118008800-118029600	Weak transcription	Colonic Mucosa	Colon
15	chr6:118009400-118039800	Weak transcription	Small Intestine	intestine
16	chr6:118010800-118019400	Strong transcription	HepG2	liver
17	chr6:118012600-118024600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr6:118012600-118039600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr6:118013600-118019000	Strong transcription	HUES6 Cell Line	embryonic stem cell
20	chr6:118013600-118019000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr6:118013800-118019800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr6:118013800-118024800	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr6:118014000-118019200	Strong transcription	HUES64 Cell Line	embryonic stem cell
24	chr6:118014000-118019200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr6:118014000-118019600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
26	chr6:118014200-118019000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr6:118014200-118019000	Strong transcription	Monocytes-CD14+_RO01746	blood
28	chr6:118014400-118019000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr6:118014400-118019000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr6:118014400-118019000	Strong transcription	Primary B cells from cord blood	blood
31	chr6:118014400-118019000	Strong transcription	Primary T helper cells PMA-I stimulated	--
32	chr6:118014400-118019000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr6:118014400-118019000	Strong transcription	Liver	Liver
34	chr6:118014400-118019400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr6:118014400-118029000	Weak transcription	A549	lung
36	chr6:118014600-118019000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr6:118014600-118019200	Strong transcription	Placenta	Placenta
38	chr6:118014600-118020400	Strong transcription	HSMM	muscle
39	chr6:118014600-118022000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr6:118015000-118019000	Strong transcription	Duodenum Smooth Muscle	Duodenum
41	chr6:118015600-118019000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
42	chr6:118015600-118030200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr6:118015800-118019200	Strong transcription	Fetal Lung	lung
44	chr6:118016600-118029400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr6:118016600-118040000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr6:118016800-118019000	ZNF genes & repeats	Fetal Brain Female	brain
47	chr6:118016800-118019600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr6:118016800-118023000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr6:118016800-118024200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr6:118016800-118024800	Weak transcription	Brain Hippocampus Middle	brain

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