Variant report

Variant	rs11964717
Chromosome Location	chr6:117919483-117919484
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:117913828..117917019-chr6:117917221..117920314,3	MCF-7	breast:
2	chr6:117803111..117805938-chr6:117918781..117921818,3	MCF-7	breast:
3	chr6:117914016..117916714-chr6:117918358..117919971,2	K562	blood:

Variant related genes	Relation type
ENSG00000164465	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10484300	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11153673	0.83[AFR][1000 genomes]
rs11153683	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11153684	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11153694	0.83[AFR][1000 genomes]
rs11752432	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11754163	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11754321	0.83[AFR][1000 genomes]
rs11754460	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11754754	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11755139	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11756843	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11757765	0.83[AFR][1000 genomes]
rs11758182	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11758857	0.83[AFR][1000 genomes]
rs11758954	0.83[AFR][1000 genomes]
rs11961026	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11961502	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11965618	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11967810	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12464	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12665046	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12665080	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13197163	0.83[AFR][1000 genomes]
rs13197261	0.83[AFR][1000 genomes]
rs13206727	0.83[AFR][1000 genomes]
rs13217247	0.83[AFR][1000 genomes]
rs2301424	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28787987	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35230921	0.83[AFR][1000 genomes]
rs35282633	0.83[AFR][1000 genomes]
rs35957877	0.83[AFR][1000 genomes]
rs57261661	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59939954	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs958904	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9766138	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9766317	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532050	chr6:117528154-118203005	ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:117871600-117922600	Weak transcription	Stomach Mucosa	stomach
2	chr6:117874600-117921400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr6:117876800-117919800	Weak transcription	Hela-S3	cervix
4	chr6:117887600-117922200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr6:117890800-117919800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr6:117890800-117919800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr6:117890800-117920600	Weak transcription	Rectal Smooth Muscle	rectum
8	chr6:117891000-117920600	Weak transcription	Brain Cingulate Gyrus	brain
9	chr6:117892200-117921400	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr6:117892400-117920800	Weak transcription	Colon Smooth Muscle	Colon
11	chr6:117894800-117920600	Weak transcription	HSMMtube	muscle
12	chr6:117894800-117921000	Weak transcription	Right Ventricle	heart
13	chr6:117894800-117922400	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr6:117895400-117920400	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr6:117898400-117920000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr6:117901400-117920600	Weak transcription	Brain Hippocampus Middle	brain
17	chr6:117904400-117919600	Weak transcription	Spleen	Spleen
18	chr6:117904400-117920600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr6:117904400-117920600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr6:117904400-117921200	Weak transcription	Esophagus	oesophagus
21	chr6:117904400-117921200	Weak transcription	Pancreas	Pancrea
22	chr6:117904400-117922800	Weak transcription	Gastric	stomach
23	chr6:117906200-117919600	Weak transcription	Lung	lung
24	chr6:117910800-117919800	Weak transcription	Left Ventricle	heart
25	chr6:117911400-117919600	Weak transcription	A549	lung
26	chr6:117911400-117919800	Weak transcription	NH-A	brain
27	chr6:117911400-117920600	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr6:117911400-117920600	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr6:117911600-117919600	Weak transcription	Liver	Liver
30	chr6:117911600-117919800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr6:117911600-117920600	Weak transcription	Brain Substantia Nigra	brain
32	chr6:117911600-117921200	Weak transcription	Primary neutrophils fromperipheralblood	blood
33	chr6:117911600-117921200	Weak transcription	Stomach Smooth Muscle	stomach
34	chr6:117911600-117922000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr6:117911800-117919600	Weak transcription	Primary B cells from peripheral blood	blood
36	chr6:117911800-117920600	Weak transcription	Adipose Nuclei	Adipose
37	chr6:117911800-117920600	Weak transcription	Thymus	Thymus
38	chr6:117912000-117920600	Weak transcription	HUVEC	blood vessel
39	chr6:117912400-117922200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr6:117914000-117920600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr6:117914800-117920600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
42	chr6:117915600-117920600	Weak transcription	Brain Anterior Caudate	brain
43	chr6:117915800-117920000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr6:117915800-117920600	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr6:117916000-117920600	Weak transcription	Pancreatic Islets	Pancreatic Islet
46	chr6:117916600-117919600	Weak transcription	Primary T helper cells PMA-I stimulated	--
47	chr6:117916600-117921200	Weak transcription	Duodenum Mucosa	Duodenum
48	chr6:117916600-117922400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
49	chr6:117916800-117919600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
50	chr6:117916800-117919600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood

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