Variant report

Variant	rs11755139
Chromosome Location	chr6:117889602-117889603
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:117879316..117881154-chr6:117888859..117891672,2	K562	blood:
2	chr6:117882225..117883953-chr6:117887540..117890097,2	K562	blood:
3	chr6:117888586..117890652-chr6:117923042..117924831,2	MCF-7	breast:
4	chr6:117886472..117890166-chr6:117892136..117894887,3	K562	blood:

Variant related genes	Relation type
ENSG00000047932	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10484300	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11153673	1.00[JPT][hapmap];0.83[AFR][1000 genomes]
rs11153683	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11153684	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11153694	0.83[AFR][1000 genomes]
rs11752432	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11754163	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11754321	0.83[AFR][1000 genomes]
rs11754460	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11754754	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11755719	1.00[JPT][hapmap]
rs11756843	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11757765	0.85[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes]
rs11758182	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11758857	0.85[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes]
rs11758954	0.83[AFR][1000 genomes]
rs11961026	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11961502	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11964717	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11965618	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11967810	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12464	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12665046	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12665080	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13197163	0.83[AFR][1000 genomes]
rs13197261	0.83[AFR][1000 genomes]
rs13206727	0.83[AFR][1000 genomes]
rs13217247	0.83[AFR][1000 genomes]
rs17575094	1.00[JPT][hapmap]
rs17575449	1.00[JPT][hapmap]
rs2301424	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28787987	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35230921	0.83[AFR][1000 genomes]
rs35282633	0.83[AFR][1000 genomes]
rs35957877	0.83[AFR][1000 genomes]
rs57261661	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59939954	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs958904	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9766138	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9766317	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532050	chr6:117528154-118203005	ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:117869800-117894400	Weak transcription	Lung	lung
2	chr6:117869800-117903800	Weak transcription	Spleen	Spleen
3	chr6:117869800-117904000	Weak transcription	Gastric	stomach
4	chr6:117869800-117904000	Weak transcription	Pancreas	Pancrea
5	chr6:117871000-117889800	Weak transcription	Fetal Heart	heart
6	chr6:117871600-117922600	Weak transcription	Stomach Mucosa	stomach
7	chr6:117872200-117894600	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr6:117872200-117905600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr6:117874600-117921400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr6:117875200-117893800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr6:117876800-117919800	Weak transcription	Hela-S3	cervix
12	chr6:117877000-117903800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr6:117879800-117900400	Strong transcription	Muscle Satellite Cultured Cells	--
14	chr6:117880200-117901000	Strong transcription	Osteobl	bone
15	chr6:117880400-117892200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr6:117880400-117895800	Strong transcription	Rectal Mucosa Donor 31	rectum
17	chr6:117880400-117900800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr6:117880600-117899800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr6:117880800-117894000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr6:117880800-117903600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr6:117880800-117903600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr6:117880800-117904000	Weak transcription	Aorta	Aorta
23	chr6:117880800-117904000	Weak transcription	Esophagus	oesophagus
24	chr6:117881600-117894400	Strong transcription	HMEC	breast
25	chr6:117881600-117895600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr6:117881600-117895800	Strong transcription	Primary T cells fromperipheralblood	blood
27	chr6:117881600-117900800	Strong transcription	Primary monocytes fromperipheralblood	blood
28	chr6:117881600-117900800	Strong transcription	Monocytes-CD14+_RO01746	blood
29	chr6:117881800-117897000	Strong transcription	Liver	Liver
30	chr6:117881800-117901600	Strong transcription	Dnd41	blood
31	chr6:117882200-117896800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr6:117882200-117899600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr6:117882400-117892200	Strong transcription	Primary neutrophils fromperipheralblood	blood
34	chr6:117882400-117894800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr6:117882400-117895800	Strong transcription	Primary T helper cells fromperipheralblood	blood
36	chr6:117882600-117894800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
37	chr6:117882600-117895000	Strong transcription	Primary B cells from peripheral blood	blood
38	chr6:117882600-117916400	Weak transcription	Small Intestine	intestine
39	chr6:117882800-117890200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr6:117883000-117892800	Strong transcription	Placenta	Placenta
41	chr6:117883000-117902800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr6:117883200-117891200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr6:117883200-117895400	Strong transcription	Skeletal Muscle Female	skeletal muscle
44	chr6:117883400-117892600	Strong transcription	HUES48 Cell Line	embryonic stem cell
45	chr6:117883400-117893000	Strong transcription	HUES6 Cell Line	embryonic stem cell
46	chr6:117883400-117893000	Strong transcription	HUES64 Cell Line	embryonic stem cell
47	chr6:117883400-117897200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
48	chr6:117883400-117900800	Strong transcription	HepG2	liver
49	chr6:117883800-117895800	Strong transcription	Primary T helper cells PMA-I stimulated	--
50	chr6:117884000-117896400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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