Variant report

Variant	rs11756843
Chromosome Location	chr6:117903106-117903107
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:117901608..117904180-chr6:117924058..117926949,2	K562	blood:
2	chr6:117901081..117903623-chr6:117915436..117916982,2	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10484300	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11153673	1.00[JPT][hapmap];0.83[AFR][1000 genomes]
rs11153683	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11153684	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11153694	0.83[AFR][1000 genomes]
rs11752432	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11754163	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11754321	0.83[AFR][1000 genomes]
rs11754460	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11754754	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11755139	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11755719	1.00[JPT][hapmap]
rs11757765	0.85[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes]
rs11758182	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11758857	0.85[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes]
rs11758954	0.83[AFR][1000 genomes]
rs11961026	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11961502	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11964717	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11965618	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11967810	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12464	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12665046	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12665080	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13197163	0.83[AFR][1000 genomes]
rs13197261	0.83[AFR][1000 genomes]
rs13206727	0.83[AFR][1000 genomes]
rs13217247	0.83[AFR][1000 genomes]
rs17575094	1.00[JPT][hapmap]
rs17575449	1.00[JPT][hapmap]
rs2301424	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28787987	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35230921	0.83[AFR][1000 genomes]
rs35282633	0.83[AFR][1000 genomes]
rs35957877	0.83[AFR][1000 genomes]
rs57261661	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59939954	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs958904	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9766138	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9766317	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532050	chr6:117528154-118203005	ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:117869800-117903800	Weak transcription	Spleen	Spleen
2	chr6:117869800-117904000	Weak transcription	Gastric	stomach
3	chr6:117869800-117904000	Weak transcription	Pancreas	Pancrea
4	chr6:117871600-117922600	Weak transcription	Stomach Mucosa	stomach
5	chr6:117872200-117905600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr6:117874600-117921400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr6:117876800-117919800	Weak transcription	Hela-S3	cervix
8	chr6:117877000-117903800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr6:117880800-117903600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr6:117880800-117903600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr6:117880800-117904000	Weak transcription	Aorta	Aorta
12	chr6:117880800-117904000	Weak transcription	Esophagus	oesophagus
13	chr6:117882600-117916400	Weak transcription	Small Intestine	intestine
14	chr6:117884600-117904000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr6:117884600-117916200	Weak transcription	Fetal Brain Male	brain
16	chr6:117886600-117903600	Weak transcription	Brain Germinal Matrix	brain
17	chr6:117887600-117922200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr6:117887800-117906800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr6:117889800-117905600	Weak transcription	Ovary	ovary
20	chr6:117890600-117912600	Weak transcription	Fetal Heart	heart
21	chr6:117890600-117918600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr6:117890800-117910000	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr6:117890800-117914000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr6:117890800-117918400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr6:117890800-117919800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr6:117890800-117919800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr6:117890800-117920600	Weak transcription	Rectal Smooth Muscle	rectum
28	chr6:117891000-117903600	Weak transcription	Thymus	Thymus
29	chr6:117891000-117906800	Weak transcription	Psoas Muscle	Psoas
30	chr6:117891000-117910000	Weak transcription	NHEK	skin
31	chr6:117891000-117911200	Weak transcription	Stomach Smooth Muscle	stomach
32	chr6:117891000-117920600	Weak transcription	Brain Cingulate Gyrus	brain
33	chr6:117892200-117903600	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr6:117892200-117918400	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr6:117892200-117921400	Weak transcription	Placenta Amnion	Placenta Amnion
36	chr6:117892400-117910000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr6:117892400-117920800	Weak transcription	Colon Smooth Muscle	Colon
38	chr6:117894200-117919000	Weak transcription	Fetal Kidney	kidney
39	chr6:117894600-117910200	Weak transcription	HUVEC	blood vessel
40	chr6:117894800-117903600	Weak transcription	Cortex derived primary cultured neurospheres	brain
41	chr6:117894800-117903600	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr6:117894800-117904000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
43	chr6:117894800-117909800	Weak transcription	Left Ventricle	heart
44	chr6:117894800-117910800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr6:117894800-117920600	Weak transcription	HSMMtube	muscle
46	chr6:117894800-117921000	Weak transcription	Right Ventricle	heart
47	chr6:117894800-117922400	Weak transcription	H9 Cell Line	embryonic stem cell
48	chr6:117895200-117910800	Weak transcription	Primary neutrophils fromperipheralblood	blood
49	chr6:117895400-117903200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr6:117895400-117903400	Weak transcription	Fetal Intestine Small	intestine

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