Variant report

Variant	rs11754754
Chromosome Location	chr6:117934732-117934733
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:117922411..117925428-chr6:117932859..117936021,3	K562	blood:

Variant related genes	Relation type
ENSG00000047932	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10484300	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11153673	0.83[AFR][1000 genomes]
rs11153683	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11153684	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11153694	0.83[AFR][1000 genomes]
rs11752432	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11754163	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11754321	0.83[AFR][1000 genomes]
rs11754460	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11755139	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11756843	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11757765	0.85[CHB][hapmap];0.83[AFR][1000 genomes]
rs11758182	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11758857	0.85[CHB][hapmap];0.83[AFR][1000 genomes]
rs11758954	0.83[AFR][1000 genomes]
rs11961026	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11961502	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11964717	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11965618	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11967810	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12464	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12665046	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12665080	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13197163	0.83[AFR][1000 genomes]
rs13197261	0.83[AFR][1000 genomes]
rs13206727	0.83[AFR][1000 genomes]
rs13217247	0.83[AFR][1000 genomes]
rs2301424	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28787987	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35230921	0.83[AFR][1000 genomes]
rs35282633	0.83[AFR][1000 genomes]
rs35957877	0.83[AFR][1000 genomes]
rs57261661	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59939954	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs958904	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9766138	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9766317	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532050	chr6:117528154-118203005	ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:117929400-117934800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr6:117929400-117938600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:117931600-117935400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr6:117931600-117937000	Weak transcription	Placenta	Placenta
5	chr6:117931800-117937000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr6:117933200-117934800	Enhancers	H1 Cell Line	embryonic stem cell
7	chr6:117933200-117936600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr6:117933400-117934800	Enhancers	Placenta Amnion	Placenta Amnion
9	chr6:117933800-117935400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chr6:117934200-117934800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr6:117934200-117935800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
12	chr6:117934200-117938600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr6:117934400-117935000	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
14	chr6:117934400-117935400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr6:117934400-117935600	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
16	chr6:117934400-117935600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
17	chr6:117934400-117935800	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
18	chr6:117934400-117936000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
19	chr6:117934400-117936800	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr6:117934400-117937000	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr6:117934600-117935200	Enhancers	NH-A	brain
22	chr6:117934600-117935400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr6:117934600-117935400	Enhancers	Primary T cells fromperipheralblood	blood
24	chr6:117934600-117935600	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
25	chr6:117934600-117936000	Enhancers	Primary T cells from cord blood	blood
26	chr6:117934600-117936000	Enhancers	Primary T helper naive cells from peripheral blood	blood
27	chr6:117934600-117936000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
28	chr6:117934600-117936000	Enhancers	Primary T helper cells PMA-I stimulated	--
29	chr6:117934600-117936000	Enhancers	Primary T helper cells fromperipheralblood	blood
30	chr6:117934600-117936600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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