Variant report

Variant	rs11964466
Chromosome Location	chr6:24203203-24203204
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10943440	0.83[AMR][1000 genomes]
rs10943442	0.83[AMR][1000 genomes]
rs10943444	0.83[AMR][1000 genomes]
rs11963068	0.83[AMR][1000 genomes]
rs11963096	0.83[AMR][1000 genomes]
rs12189579	0.83[AMR][1000 genomes]
rs12191358	0.83[AMR][1000 genomes]
rs12193279	0.83[AMR][1000 genomes]
rs12193587	0.83[AMR][1000 genomes]
rs12195192	0.83[AMR][1000 genomes]
rs12196920	0.83[AMR][1000 genomes]
rs12201820	0.83[AMR][1000 genomes]
rs12202106	0.83[AMR][1000 genomes]
rs12206101	0.89[AMR][1000 genomes]
rs12211642	0.83[AMR][1000 genomes]
rs12215818	0.83[AMR][1000 genomes]
rs16888733	0.83[AMR][1000 genomes]
rs36134518	0.97[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4142467	0.89[AMR][1000 genomes]
rs57497739	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60223508	0.83[AMR][1000 genomes]
rs6899577	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72894639	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72894641	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72894648	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72894650	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72894652	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72894656	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72894666	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72894668	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72894702	0.89[AMR][1000 genomes]
rs72896610	0.83[AMR][1000 genomes]
rs72896611	0.83[AMR][1000 genomes]
rs72896615	0.83[AMR][1000 genomes]
rs72896661	0.83[AMR][1000 genomes]
rs72896663	0.83[AMR][1000 genomes]
rs72898730	0.83[AMR][1000 genomes]
rs72898733	0.83[AMR][1000 genomes]
rs72898736	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029930	chr6:23481989-24289948	Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv601146	chr6:24166233-24215665	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24196400-24205400	Weak transcription	Fetal Intestine Small	intestine
2	chr6:24199400-24204600	Weak transcription	HepG2	liver
3	chr6:24199400-24224600	Weak transcription	Pancreas	Pancrea
4	chr6:24201600-24206000	Weak transcription	Fetal Kidney	kidney

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