Variant report

Variant	rs36134518
Chromosome Location	chr6:77964292-77964293
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10943440	0.80[AMR][1000 genomes]
rs10943442	0.80[AMR][1000 genomes]
rs10943444	0.80[AMR][1000 genomes]
rs11963068	0.80[AMR][1000 genomes]
rs11963096	0.80[AMR][1000 genomes]
rs11964466	0.97[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12189579	0.80[AMR][1000 genomes]
rs12191358	0.80[AMR][1000 genomes]
rs12193279	0.80[AMR][1000 genomes]
rs12193587	0.80[AMR][1000 genomes]
rs12195192	0.80[AMR][1000 genomes]
rs12196920	0.80[AMR][1000 genomes]
rs12201820	0.80[AMR][1000 genomes]
rs12202106	0.80[AMR][1000 genomes]
rs12206101	0.86[AMR][1000 genomes]
rs12211642	0.80[AMR][1000 genomes]
rs12215818	0.80[AMR][1000 genomes]
rs16888733	0.80[AMR][1000 genomes]
rs4142467	0.86[AMR][1000 genomes]
rs57497739	0.97[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs60223508	0.80[AMR][1000 genomes]
rs6899577	0.97[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs72894639	0.89[AMR][1000 genomes]
rs72894641	0.89[AMR][1000 genomes]
rs72894648	0.91[AMR][1000 genomes]
rs72894650	0.91[AMR][1000 genomes]
rs72894652	0.89[AMR][1000 genomes]
rs72894656	0.91[AMR][1000 genomes]
rs72894666	0.91[AMR][1000 genomes]
rs72894668	0.91[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs72894702	0.86[AMR][1000 genomes]
rs72896610	0.80[AMR][1000 genomes]
rs72896611	0.80[AMR][1000 genomes]
rs72896615	0.80[AMR][1000 genomes]
rs72896661	0.80[AMR][1000 genomes]
rs72896663	0.80[AMR][1000 genomes]
rs72898730	0.80[AMR][1000 genomes]
rs72898733	0.80[AMR][1000 genomes]
rs72898736	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017082	chr6:77585310-78258237	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv534282	chr6:77764575-78351994	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1034979	chr6:77781244-78426249	Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv538324	chr6:77781244-78426249	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv2753543	chr6:77791848-78059351	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1015307	chr6:77902559-78352291	Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:77959800-77974600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr6:77962000-77968000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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