Variant report

Variant	rs11964559
Chromosome Location	chr6:142318225-142318226
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10428764	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1336271	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1414745	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1414749	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1414750	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17054023	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17071295	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17071309	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17071311	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17071313	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17071318	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17071354	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17071356	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17071362	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17071365	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17071369	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17071371	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1932631	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2152587	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2152588	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2184733	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4275079	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4478421	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58768480	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60224718	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6570487	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6907237	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6918829	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73777114	1.00[EUR][1000 genomes]
rs7742103	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7750642	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7754673	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7764255	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029504	chr6:142131846-142333198	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv538458	chr6:142131846-142333198	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1017195	chr6:142142454-142336722	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv604792	chr6:142192725-142399251	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv1019170	chr6:142234933-142397088	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv886731	chr6:142287143-142364628	Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv886732	chr6:142290338-142536049	Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
8	nsv886733	chr6:142316672-142514226	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:142310800-142334400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:142311000-142329000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:142312200-142329000	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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