Variant report

Variant	rs6570487
Chromosome Location	chr6:142335913-142335914
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10428764	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11964559	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1336271	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1414745	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1414749	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1414750	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17054023	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17071309	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17071311	1.00[EUR][1000 genomes]
rs17071313	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17071318	1.00[EUR][1000 genomes]
rs17071354	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17071356	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17071362	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17071365	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17071369	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17071371	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1932631	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2152587	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2152588	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2184733	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4275079	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4478421	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs58768480	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60224718	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6907237	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6918829	1.00[EUR][1000 genomes]
rs73777114	1.00[EUR][1000 genomes]
rs7742103	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7750642	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7754673	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7764255	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017195	chr6:142142454-142336722	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv604792	chr6:142192725-142399251	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv1019170	chr6:142234933-142397088	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv886731	chr6:142287143-142364628	Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv886732	chr6:142290338-142536049	Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
6	nsv886733	chr6:142316672-142514226	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
7	nsv464069	chr6:142322456-142407741	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
8	nsv604794	chr6:142322456-142407741	Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:142331600-142343000	Weak transcription	K562	blood
2	chr6:142333200-142336200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr6:142333800-142336400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr6:142333800-142336800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr6:142333800-142336800	Enhancers	Hela-S3	cervix
6	chr6:142334400-142336800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr6:142334800-142336400	Enhancers	HMEC	breast
8	chr6:142334800-142337000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr6:142335000-142336000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr6:142335000-142336000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr6:142335000-142336000	Enhancers	HSMMtube	muscle
12	chr6:142335000-142336400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr6:142335000-142336400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr6:142335000-142336600	Flanking Active TSS	HUVEC	blood vessel
15	chr6:142335000-142336600	Flanking Active TSS	NHEK	skin
16	chr6:142335200-142336000	Enhancers	Placenta Amnion	Placenta Amnion
17	chr6:142335200-142336200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr6:142335400-142336200	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
19	chr6:142335400-142336400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr6:142335400-142337000	Enhancers	H9 Cell Line	embryonic stem cell
21	chr6:142335600-142336000	Active TSS	HUES6 Cell Line	embryonic stem cell
22	chr6:142335600-142336000	Enhancers	Muscle Satellite Cultured Cells	--
23	chr6:142335600-142336000	Enhancers	HSMM	muscle
24	chr6:142335600-142336000	Enhancers	NH-A	brain
25	chr6:142335600-142336000	Enhancers	Osteobl	bone
26	chr6:142335600-142336200	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
27	chr6:142335600-142336200	Enhancers	Fetal Kidney	kidney
28	chr6:142335600-142336200	Active TSS	A549	lung
29	chr6:142335600-142336400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
30	chr6:142335600-142336800	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
31	chr6:142335600-142336800	Enhancers	NHLF	lung
32	chr6:142335600-142343000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr6:142335600-142351200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr6:142335800-142336000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr6:142335800-142336000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr6:142335800-142336000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr6:142335800-142336200	Flanking Active TSS	H1 Cell Line	embryonic stem cell
38	chr6:142335800-142336200	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr6:142335800-142336200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr6:142335800-142336200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr6:142335800-142336200	Active TSS	NHDF-Ad	bronchial
42	chr6:142335800-142336800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
43	chr6:142335800-142340200	Active TSS	iPS-15b Cell Line	embryonic stem cell

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