Variant report
| Variant | rs11964808 |
|---|---|
| Chromosome Location | chr6:74082037-74082038 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| OOEP | TF binding region |
| ENSG00000234882 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:15)
| rs_ID | r2[population] |
|---|---|
| rs11961187 | 0.90[AMR][1000 genomes] |
| rs12662148 | 1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[ASN][1000 genomes] |
| rs12663695 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12665048 | 0.94[AMR][1000 genomes];0.87[ASN][1000 genomes] |
| rs16883692 | 0.94[AMR][1000 genomes] |
| rs2280286 | 0.87[AMR][1000 genomes] |
| rs3734512 | 0.94[AMR][1000 genomes];0.87[ASN][1000 genomes] |
| rs3734516 | 1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.85[ASN][1000 genomes] |
| rs3757107 | 0.94[AMR][1000 genomes];0.87[ASN][1000 genomes] |
| rs723402 | 0.94[AMR][1000 genomes];0.87[ASN][1000 genomes] |
| rs72961942 | 1.00[AFR][1000 genomes] |
| rs7747491 | 0.85[AMR][1000 genomes] |
| rs930806 | 0.94[AMR][1000 genomes];0.86[ASN][1000 genomes] |
| rs930807 | 1.00[AFR][1000 genomes];0.98[AMR][1000 genomes] |
| rs930808 | 0.94[AMR][1000 genomes];0.87[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3410973 | chr6:73716033-74419545 | Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 191 gene(s) | inside rSNPs | diseases |
| 2 | nsv830693 | chr6:74049342-74216080 | Flanking Active TSS Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 27 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:74077600-74084200 | Weak transcription | iPS-15b Cell Line | embryonic stem cell |
