Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	6:74000304-74012200..6:74078047-74099067	H1-hESC	embryonic stem cell:	embryo

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C6orf221-1	chr6:74079427-74079808	ENSG00000231332.1
2	lnc-C6orf221-1	chr6:74079427-74079808	ENSG00000231332.2

Variant related genes	Relation type
ENSG00000234882	Chromatin interaction

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11964808	0.87[AMR][1000 genomes]
rs12662148	0.83[AMR][1000 genomes]
rs12663695	0.87[AMR][1000 genomes]
rs12665048	0.81[AMR][1000 genomes]
rs16883692	0.81[AMR][1000 genomes]
rs2085117	1.00[EUR][1000 genomes]
rs3734512	0.81[AMR][1000 genomes]
rs3734516	0.83[AMR][1000 genomes]
rs3757107	0.81[AMR][1000 genomes]
rs56088009	1.00[EUR][1000 genomes]
rs57134053	1.00[EUR][1000 genomes]
rs58347121	1.00[EUR][1000 genomes]
rs61299714	1.00[EUR][1000 genomes]
rs723402	0.81[AMR][1000 genomes]
rs73462553	1.00[EUR][1000 genomes]
rs73754624	0.88[AMR][1000 genomes]
rs73754625	0.88[AMR][1000 genomes]
rs73754626	1.00[EUR][1000 genomes]
rs7740005	0.87[YRI][hapmap];1.00[EUR][1000 genomes]
rs7747491	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7768587	1.00[EUR][1000 genomes]
rs930806	0.81[AMR][1000 genomes]
rs930807	0.85[AMR][1000 genomes]
rs930808	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3410973	chr6:73716033-74419545	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	nsv830693	chr6:74049342-74216080	Flanking Active TSS Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:74077600-74084200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr6:74078800-74081600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr6:74079400-74079800	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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