Variant report

Variant	rs56088009
Chromosome Location	chr6:74077817-74077818
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs2085117	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2280286	1.00[EUR][1000 genomes]
rs57134053	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58347121	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61299714	1.00[EUR][1000 genomes]
rs62440593	0.88[AFR][1000 genomes]
rs62440594	0.90[AFR][1000 genomes]
rs73462553	1.00[EUR][1000 genomes]
rs73754622	0.84[ASN][1000 genomes]
rs73754626	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7740005	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7747491	1.00[EUR][1000 genomes]
rs7768587	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3410973	chr6:73716033-74419545	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	nsv830693	chr6:74049342-74216080	Flanking Active TSS Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:74073600-74078800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:74077400-74078200	Enhancers	H1 Cell Line	embryonic stem cell
3	chr6:74077400-74078800	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr6:74077600-74078000	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr6:74077600-74078000	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr6:74077600-74078000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr6:74077600-74078600	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr6:74077600-74084200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr6:74077800-74078000	Enhancers	H9 Cell Line	embryonic stem cell
10	chr6:74077800-74078000	Flanking Active TSS	K562	blood
11	chr6:74077800-74078200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
12	chr6:74077800-74078200	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr6:74077800-74078600	Enhancers	iPS-18 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links