Variant report
| Variant | rs73462553 |
|---|---|
| Chromosome Location | chr6:74026277-74026278 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:7)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:7 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | 6:73927031-73938730..6:74020790-74026830 | GM12878 | blood: | |
| 2 | chr6:74017750..74019913-chr6:74026260..74028005,2 | K562 | blood: | |
| 3 | 6:74020790-74026830..6:74078047-74099067 | Hela-S3 | cervix: | |
| 4 | 6:74020790-74026830..6:74062967-74076046 | Hela-S3 | cervix: | |
| 5 | chr6:74016335..74020471-chr6:74023395..74026748,3 | MCF-7 | breast: | |
| 6 | 6:74020790-74026830..6:74099986-74112890 | H1-hESC | embryonic stem cell: | embryo |
| 7 | 6:73969782-73974110..6:74020790-74026830 | GM12878 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000203909 | Chromatin interaction |
| ENSG00000235174 | Chromatin interaction |
| ENSG00000263378 | Chromatin interaction |
| ENSG00000224221 | Chromatin interaction |
| ENSG00000203907 | Chromatin interaction |
| ENSG00000203908 | Chromatin interaction |
| ENSG00000243501 | Chromatin interaction |
| ENSG00000229852 | Chromatin interaction |
| ENSG00000238464 | Chromatin interaction |
| ENSG00000135314 | Chromatin interaction |
| ENSG00000231332 | Chromatin interaction |
| ENSG00000080007 | Chromatin interaction |
| ENSG00000256980 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:11)
| rs_ID | r2[population] |
|---|---|
| rs2085117 | 1.00[EUR][1000 genomes] |
| rs2280286 | 1.00[EUR][1000 genomes] |
| rs56088009 | 1.00[EUR][1000 genomes] |
| rs57134053 | 1.00[EUR][1000 genomes] |
| rs58347121 | 1.00[EUR][1000 genomes] |
| rs61299714 | 1.00[EUR][1000 genomes] |
| rs6931338 | 0.98[AFR][1000 genomes];0.98[ASN][1000 genomes] |
| rs73754626 | 1.00[EUR][1000 genomes] |
| rs7740005 | 1.00[EUR][1000 genomes] |
| rs7747491 | 1.00[EUR][1000 genomes] |
| rs7768587 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3410973 | chr6:73716033-74419545 | Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 191 gene(s) | inside rSNPs | diseases |
| 2 | nsv518874 | chr6:74014468-74041424 | Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 21 gene(s) | inside rSNPs | diseases |
| 3 | nsv966628 | chr6:74020000-74034657 | Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 17 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:74020400-74027400 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |
