Variant report

Variant	rs62440593
Chromosome Location	chr6:74106209-74106210
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:74104994..74106776-chr6:74107984..74110223,2	K562	blood:
2	chr6:74104942..74106987-chr6:74128307..74130235,2	K562	blood:
3	chr6:74099074..74102810-chr6:74103260..74106649,3	K562	blood:
4	6:73859137-73881637..6:74099986-74112890	GM12878	blood:
5	chr6:74097324..74100434-chr6:74104936..74106644,3	MCF-7	breast:
6	chr6:74102482..74106495-chr6:74159619..74163030,5	MCF-7	breast:
7	6:74000304-74012200..6:74099986-74112890	H1-hESC	embryonic stem cell:	embryo
8	chr6:74103315..74106293-chr6:74362194..74365078,3	MCF-7	breast:

No data

No data

No data

Variant related genes	Relation type
ENSG00000234025	Chromatin interaction
ENSG00000234882	Chromatin interaction
ENSG00000224221	Chromatin interaction
ENSG00000164430	Chromatin interaction
ENSG00000119899	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs2085117	0.98[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs2280284	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56088009	0.88[AFR][1000 genomes]
rs57134053	0.88[AFR][1000 genomes]
rs62440590	0.82[EUR][1000 genomes]
rs62440594	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73754628	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7768587	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3410973	chr6:73716033-74419545	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	nsv830693	chr6:74049342-74216080	Flanking Active TSS Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:74099200-74110200	Weak transcription	Right Atrium	heart
2	chr6:74101800-74108400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr6:74104800-74109000	Weak transcription	Fetal Intestine Small	intestine
4	chr6:74105000-74109000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr6:74105400-74117200	Weak transcription	Placenta	Placenta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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