Variant report

Variant	rs11964877
Chromosome Location	chr6:16872232-16872233
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11965344	0.83[AMR][1000 genomes]
rs34356441	0.83[AMR][1000 genomes]
rs55710454	0.83[AMR][1000 genomes]
rs59362501	0.83[AMR][1000 genomes]
rs59408158	0.83[AMR][1000 genomes]
rs59685669	0.83[AMR][1000 genomes]
rs73725258	0.83[AMR][1000 genomes]
rs73725259	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73725261	0.83[AMR][1000 genomes]
rs73725273	0.83[AMR][1000 genomes]
rs73725274	0.83[AMR][1000 genomes]
rs73725275	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1838885	chr6:16866948-16885765	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv1837694	chr6:16866948-16885869	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv1842967	chr6:16866948-16885869	Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:16871200-16873000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr6:16871800-16872800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr6:16872200-16873200	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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