Variant report

Variant	rs59408158
Chromosome Location	chr6:16896955-16896956
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11964877	0.83[AMR][1000 genomes]
rs11965344	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34356441	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55654726	0.81[AFR][1000 genomes]
rs55710454	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56311230	0.81[AFR][1000 genomes]
rs59362501	1.00[AMR][1000 genomes]
rs59685669	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73725259	0.83[AMR][1000 genomes]
rs73725261	1.00[AMR][1000 genomes]
rs73725273	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73725274	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73725275	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758037	chr6:16873271-16912538	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	esv2759409	chr6:16873271-16912538	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:16896800-16897000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr6:16896800-16897200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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