Variant report

Variant	rs11965163
Chromosome Location	chr6:167053525-167053526
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:167021736..167024085-chr6:167052097..167054804,2	K562	blood:
2	chr6:167044666..167049346-chr6:167050228..167055763,8	K562	blood:
3	chr6:167042473..167044859-chr6:167051026..167053525,2	MCF-7	breast:
4	chr6:167045626..167049988-chr6:167051387..167056754,6	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11961856	1.00[AMR][1000 genomes]
rs11963670	1.00[AMR][1000 genomes]
rs16899261	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs16899357	1.00[AMR][1000 genomes]
rs7760613	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3490076	chr6:166727901-167306743	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
2	esv3490077	chr6:166727901-167306743	Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
3	nsv605260	chr6:166984094-167455139	Enhancers Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
4	nsv432984	chr6:167018915-167181613	Bivalent Enhancer Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1023649	chr6:167026469-167060732	Active TSS Weak transcription Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:167043400-167058200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr6:167045000-167061200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr6:167046600-167054600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr6:167047600-167061200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr6:167048800-167054000	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr6:167050600-167053600	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr6:167050800-167053800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr6:167050800-167054200	Weak transcription	Gastric	stomach
9	chr6:167051000-167053800	Weak transcription	Stomach Smooth Muscle	stomach
10	chr6:167051000-167054000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr6:167051000-167054200	Weak transcription	Esophagus	oesophagus
12	chr6:167051200-167054000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr6:167051200-167054000	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr6:167051400-167053800	Weak transcription	Right Atrium	heart
15	chr6:167051400-167054000	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr6:167051400-167054200	Weak transcription	Lung	lung
17	chr6:167051600-167053800	Weak transcription	Right Ventricle	heart
18	chr6:167052800-167054000	Enhancers	Left Ventricle	heart
19	chr6:167052800-167054600	Enhancers	Fetal Heart	heart
20	chr6:167053000-167053800	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr6:167053000-167054400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr6:167053000-167054600	Enhancers	Fetal Muscle Leg	muscle
23	chr6:167053200-167053600	Bivalent Enhancer	Primary T cells from cord blood	blood
24	chr6:167053200-167053800	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr6:167053200-167053800	Enhancers	NHEK	skin
26	chr6:167053200-167054000	Bivalent Enhancer	Adipose Nuclei	Adipose
27	chr6:167053200-167054400	Flanking Active TSS	HUVEC	blood vessel
28	chr6:167053400-167053600	Flanking Active TSS	Primary hematopoietic stem cells	blood
29	chr6:167053400-167054000	Enhancers	iPS-18 Cell Line	embryonic stem cell
30	chr6:167053400-167054200	Bivalent Enhancer	Primary B cells from peripheral blood	blood
31	chr6:167053400-167054200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
32	chr6:167053400-167054200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
33	chr6:167053400-167054400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr6:167053400-167054400	Bivalent Enhancer	Primary B cells from cord blood	blood
35	chr6:167053400-167054400	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
36	chr6:167053400-167054400	Weak transcription	Spleen	Spleen
37	chr6:167053400-167054600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

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