Variant report

Variant	rs16899261
Chromosome Location	chr6:167037406-167037407
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:167035604..167038235-chr6:167040017..167042758,3	K562	blood:

Variant related genes	Relation type
ENSG00000071242	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11961856	1.00[AMR][1000 genomes]
rs11963670	1.00[AMR][1000 genomes]
rs11965163	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs16899357	1.00[AMR][1000 genomes]
rs7760613	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3490076	chr6:166727901-167306743	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
2	esv3490077	chr6:166727901-167306743	Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
3	nsv605260	chr6:166984094-167455139	Enhancers Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
4	nsv432984	chr6:167018915-167181613	Bivalent Enhancer Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1023649	chr6:167026469-167060732	Active TSS Weak transcription Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:167029200-167039000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr6:167032600-167038600	Enhancers	NHLF	lung
3	chr6:167032600-167039400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr6:167032800-167039000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:167032800-167039000	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr6:167033200-167039000	Enhancers	HUVEC	blood vessel
7	chr6:167033600-167039000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr6:167034400-167039000	Weak transcription	Liver	Liver
9	chr6:167034600-167037800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr6:167034600-167037800	Weak transcription	Brain Substantia Nigra	brain
11	chr6:167034600-167037800	Weak transcription	Fetal Lung	lung
12	chr6:167034600-167038800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr6:167034600-167038800	Enhancers	HMEC	breast
14	chr6:167034600-167038800	Weak transcription	HSMMtube	muscle
15	chr6:167034600-167039000	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr6:167034800-167037800	Weak transcription	Adipose Nuclei	Adipose
17	chr6:167034800-167037800	Weak transcription	Fetal Stomach	stomach
18	chr6:167034800-167037800	Weak transcription	HSMM	muscle
19	chr6:167034800-167038000	Weak transcription	Rectal Smooth Muscle	rectum
20	chr6:167034800-167038800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr6:167034800-167038800	Weak transcription	Stomach Smooth Muscle	stomach
22	chr6:167034800-167039000	Weak transcription	Brain Hippocampus Middle	brain
23	chr6:167034800-167039000	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr6:167034800-167039000	Weak transcription	Fetal Brain Male	brain
25	chr6:167034800-167039000	Weak transcription	Fetal Kidney	kidney
26	chr6:167034800-167039200	Weak transcription	Colon Smooth Muscle	Colon
27	chr6:167034800-167039400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr6:167034800-167039800	Weak transcription	Spleen	Spleen
29	chr6:167035000-167038000	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr6:167035000-167038000	Weak transcription	Fetal Brain Female	brain
31	chr6:167035200-167039200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr6:167035400-167037800	Weak transcription	Brain Anterior Caudate	brain
33	chr6:167035400-167037800	Weak transcription	Brain Cingulate Gyrus	brain
34	chr6:167035400-167038000	Weak transcription	Fetal Muscle Leg	muscle
35	chr6:167035400-167039400	Weak transcription	Fetal Muscle Trunk	muscle
36	chr6:167035600-167038800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr6:167035600-167038800	Weak transcription	Brain Germinal Matrix	brain
38	chr6:167036200-167039200	Enhancers	Skeletal Muscle Male	skeletal muscle
39	chr6:167036400-167037800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
40	chr6:167036400-167038800	Enhancers	NHEK	skin
41	chr6:167036400-167038800	Enhancers	Osteobl	bone
42	chr6:167036600-167039000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr6:167036600-167039400	Enhancers	Fetal Heart	heart
44	chr6:167036800-167037600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr6:167036800-167038000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr6:167036800-167038200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr6:167036800-167038400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr6:167036800-167038600	Enhancers	Left Ventricle	heart
49	chr6:167036800-167038800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr6:167036800-167038800	Enhancers	Pancreas	Pancrea

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