Variant report

Variant	rs11965410
Chromosome Location	chr6:101840009-101840010
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:101839704..101841744-chr6:101842658..101845506,3	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11966411	0.97[AFR][1000 genomes]
rs1352040	0.97[AFR][1000 genomes]
rs6903250	0.96[AFR][1000 genomes];0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020400	chr6:101172705-101981665	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv538390	chr6:101172705-101981665	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv515487	chr6:101831312-101840009	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:101839400-101840200	Bivalent Enhancer	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr6:101839400-101840200	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr6:101839400-101840200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr6:101839400-101840200	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr6:101839400-101840800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
6	chr6:101839600-101840200	Bivalent Enhancer	Brain Cingulate Gyrus	brain
7	chr6:101839600-101840400	Bivalent Enhancer	Brain Germinal Matrix	brain
8	chr6:101839600-101840800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
9	chr6:101839600-101840800	Bivalent Enhancer	Fetal Stomach	stomach
10	chr6:101839600-101841000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr6:101839600-101842200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
12	chr6:101839600-101842200	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
13	chr6:101839600-101842200	Active TSS	Pancreatic Islets	Pancreatic Islet
14	chr6:101839600-101842400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
15	chr6:101839600-101842400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
16	chr6:101839800-101840200	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
17	chr6:101839800-101840200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr6:101839800-101840600	Bivalent Enhancer	Fetal Brain Male	brain
19	chr6:101839800-101841000	Bivalent Enhancer	Placenta	Placenta
20	chr6:101839800-101841000	Weak transcription	Gastric	stomach
21	chr6:101839800-101842200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
22	chr6:101840000-101840200	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr6:101840000-101840200	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
24	chr6:101840000-101840200	Active TSS	Brain Angular Gyrus	brain
25	chr6:101840000-101840200	Bivalent Enhancer	Psoas Muscle	Psoas
26	chr6:101840000-101840200	Flanking Bivalent TSS/Enh	Skeletal Muscle Female	skeletal muscle
27	chr6:101840000-101840400	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr6:101840000-101840400	Bivalent Enhancer	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr6:101840000-101840400	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
30	chr6:101840000-101840400	Flanking Bivalent TSS/Enh	Brain Substantia Nigra	brain
31	chr6:101840000-101840400	Bivalent Enhancer	Fetal Kidney	kidney
32	chr6:101840000-101840400	Enhancers	Ovary	ovary
33	chr6:101840000-101840600	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr6:101840000-101840600	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr6:101840000-101840600	Flanking Bivalent TSS/Enh	Brain Anterior Caudate	brain
36	chr6:101840000-101840600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
37	chr6:101840000-101840600	Bivalent Enhancer	Fetal Intestine Small	intestine
38	chr6:101840000-101840600	Bivalent Enhancer	Right Ventricle	heart
39	chr6:101840000-101840800	Bivalent/Poised TSS	ES-UCSF4 Cell Line	embryonic stem cell
40	chr6:101840000-101840800	Bivalent Enhancer	Adipose Nuclei	Adipose
41	chr6:101840000-101841000	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr6:101840000-101841000	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
43	chr6:101840000-101841000	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
44	chr6:101840000-101841200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr6:101840000-101841200	Flanking Bivalent TSS/Enh	Fetal Brain Female	brain
46	chr6:101840000-101841200	Bivalent Enhancer	Fetal Muscle Leg	muscle
47	chr6:101840000-101841200	Enhancers	Pancreas	Pancrea
48	chr6:101840000-101841400	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr6:101840000-101841400	Bivalent Enhancer	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr6:101840000-101841400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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