Variant report

Variant	rs6903250
Chromosome Location	chr6:101840827-101840828
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:101839704..101841744-chr6:101842658..101845506,3	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11965410	0.96[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs11966411	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs1352040	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020400	chr6:101172705-101981665	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv538390	chr6:101172705-101981665	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:101839600-101841000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr6:101839600-101842200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
3	chr6:101839600-101842200	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
4	chr6:101839600-101842200	Active TSS	Pancreatic Islets	Pancreatic Islet
5	chr6:101839600-101842400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
6	chr6:101839600-101842400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
7	chr6:101839800-101841000	Bivalent Enhancer	Placenta	Placenta
8	chr6:101839800-101841000	Weak transcription	Gastric	stomach
9	chr6:101839800-101842200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
10	chr6:101840000-101841000	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr6:101840000-101841000	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
12	chr6:101840000-101841000	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
13	chr6:101840000-101841200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr6:101840000-101841200	Flanking Bivalent TSS/Enh	Fetal Brain Female	brain
15	chr6:101840000-101841200	Bivalent Enhancer	Fetal Muscle Leg	muscle
16	chr6:101840000-101841200	Enhancers	Pancreas	Pancrea
17	chr6:101840000-101841400	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr6:101840000-101841400	Bivalent Enhancer	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr6:101840000-101841400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr6:101840000-101841400	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr6:101840000-101841400	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
22	chr6:101840000-101842200	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
23	chr6:101840000-101842200	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr6:101840000-101842200	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr6:101840000-101842400	Active TSS	H9 Cell Line	embryonic stem cell
26	chr6:101840000-101842400	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
27	chr6:101840000-101843600	Active TSS	Right Atrium	heart
28	chr6:101840200-101841000	Flanking Bivalent TSS/Enh	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr6:101840200-101841000	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr6:101840200-101841400	Flanking Bivalent TSS/Enh	Muscle Satellite Cultured Cells	--
31	chr6:101840200-101841400	Flanking Bivalent TSS/Enh	Brain Cingulate Gyrus	brain
32	chr6:101840200-101842000	Bivalent/Poised TSS	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr6:101840200-101842200	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr6:101840200-101842400	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
35	chr6:101840400-101841000	Bivalent/Poised TSS	Left Ventricle	heart
36	chr6:101840400-101841200	Bivalent/Poised TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr6:101840400-101841400	Flanking Bivalent TSS/Enh	Brain Angular Gyrus	brain
38	chr6:101840400-101841400	Flanking Bivalent TSS/Enh	Brain Inferior Temporal Lobe	brain
39	chr6:101840400-101841400	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
40	chr6:101840400-101842200	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
41	chr6:101840400-101842200	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
42	chr6:101840400-101842400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr6:101840400-101843200	Bivalent/Poised TSS	Fetal Kidney	kidney
44	chr6:101840600-101841000	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr6:101840600-101841000	Bivalent/Poised TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr6:101840600-101841000	Flanking Bivalent TSS/Enh	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr6:101840600-101841000	Bivalent/Poised TSS	Fetal Intestine Small	intestine
48	chr6:101840600-101841000	Bivalent Enhancer	HMEC	breast
49	chr6:101840600-101841000	Bivalent Enhancer	NHEK	skin
50	chr6:101840600-101841200	Flanking Bivalent TSS/Enh	Brain Substantia Nigra	brain

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