Variant report

Variant	rs11965507
Chromosome Location	chr6:149195423-149195424
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:149194314..149196748-chr6:149207020..149209121,2	MCF-7	breast:
2	chr6:149193733..149196299-chr6:149257305..149260279,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11965025	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73778929	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73778930	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73778934	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73778936	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73778941	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149185800-149196000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:149186600-149196000	Weak transcription	Stomach Mucosa	stomach
3	chr6:149187800-149197200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr6:149189200-149196000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr6:149189600-149196000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr6:149190000-149197200	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr6:149190200-149195800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr6:149190400-149195800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr6:149191000-149203800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr6:149191200-149195800	Weak transcription	Rectal Smooth Muscle	rectum
11	chr6:149191200-149207600	Weak transcription	Primary B cells from cord blood	blood
12	chr6:149191400-149195600	Weak transcription	Colon Smooth Muscle	Colon
13	chr6:149191400-149195800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr6:149191400-149196000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr6:149191600-149195800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr6:149191600-149196000	Weak transcription	Fetal Lung	lung
17	chr6:149191800-149195600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr6:149191800-149197600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr6:149191800-149200200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr6:149191800-149205600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr6:149192000-149196000	Weak transcription	Esophagus	oesophagus
22	chr6:149192000-149200200	Weak transcription	Aorta	Aorta
23	chr6:149192600-149199200	Weak transcription	Spleen	Spleen
24	chr6:149192600-149205600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr6:149193000-149199600	Weak transcription	Primary B cells from peripheral blood	blood
26	chr6:149193200-149218800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr6:149193800-149195800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr6:149193800-149196200	Enhancers	HUES6 Cell Line	embryonic stem cell
29	chr6:149194400-149196200	Enhancers	H1 Cell Line	embryonic stem cell
30	chr6:149194400-149196200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
31	chr6:149194400-149196200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr6:149194600-149195800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr6:149194600-149195800	Enhancers	NHEK	skin
34	chr6:149194600-149196400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr6:149194600-149196400	Enhancers	Breast Myoepithelial Primary Cells	Breast
36	chr6:149194600-149196400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr6:149194800-149196000	Enhancers	HUES48 Cell Line	embryonic stem cell
38	chr6:149194800-149196400	Enhancers	HMEC	breast
39	chr6:149194800-149196600	Enhancers	iPS-15b Cell Line	embryonic stem cell
40	chr6:149194800-149197200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr6:149195000-149195800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr6:149195000-149196200	Enhancers	Brain Germinal Matrix	brain
43	chr6:149195000-149196400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr6:149195000-149199800	Weak transcription	Fetal Thymus	thymus
45	chr6:149195200-149195600	Weak transcription	Brain Substantia Nigra	brain
46	chr6:149195200-149195600	Flanking Active TSS	Fetal Heart	heart
47	chr6:149195200-149195600	Weak transcription	Pancreas	Pancrea
48	chr6:149195200-149195800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr6:149195200-149195800	Weak transcription	Stomach Smooth Muscle	stomach
50	chr6:149195200-149196000	Weak transcription	Right Atrium	heart

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