Variant report

Variant	rs73778929
Chromosome Location	chr6:149193303-149193304
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:149190747..149193671-chr6:149226821..149229709,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11965025	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11965507	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73778930	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73778934	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73778936	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73778941	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149185800-149196000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:149186600-149195000	Weak transcription	Pancreas	Pancrea
3	chr6:149186600-149196000	Weak transcription	Stomach Mucosa	stomach
4	chr6:149187800-149197200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr6:149188000-149193400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr6:149188000-149193400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr6:149189000-149193400	Enhancers	HMEC	breast
8	chr6:149189200-149193800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr6:149189200-149196000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr6:149189600-149194600	Weak transcription	Right Atrium	heart
11	chr6:149189600-149196000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr6:149190000-149197200	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr6:149190200-149195800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr6:149190400-149193600	Enhancers	NHEK	skin
15	chr6:149190400-149194800	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr6:149190400-149195200	Enhancers	Fetal Heart	heart
17	chr6:149190400-149195800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr6:149190800-149193800	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr6:149190800-149194800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr6:149191000-149195200	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr6:149191000-149203800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr6:149191200-149195800	Weak transcription	Rectal Smooth Muscle	rectum
23	chr6:149191200-149207600	Weak transcription	Primary B cells from cord blood	blood
24	chr6:149191400-149195000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr6:149191400-149195600	Weak transcription	Colon Smooth Muscle	Colon
26	chr6:149191400-149195800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr6:149191400-149196000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr6:149191600-149195400	Weak transcription	NH-A	brain
29	chr6:149191600-149195800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr6:149191600-149196000	Weak transcription	Fetal Lung	lung
31	chr6:149191800-149194600	Weak transcription	Left Ventricle	heart
32	chr6:149191800-149194600	Weak transcription	Stomach Smooth Muscle	stomach
33	chr6:149191800-149195600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr6:149191800-149197600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr6:149191800-149200200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr6:149191800-149205600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr6:149192000-149194400	Weak transcription	Right Ventricle	heart
38	chr6:149192000-149196000	Weak transcription	Esophagus	oesophagus
39	chr6:149192000-149200200	Weak transcription	Aorta	Aorta
40	chr6:149192400-149193400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr6:149192400-149194400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr6:149192400-149194400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr6:149192400-149194600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
44	chr6:149192600-149193800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr6:149192600-149194400	Weak transcription	H1 Cell Line	embryonic stem cell
46	chr6:149192600-149195000	Weak transcription	Brain Substantia Nigra	brain
47	chr6:149192600-149199200	Weak transcription	Spleen	Spleen
48	chr6:149192600-149205600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr6:149193000-149199600	Weak transcription	Primary B cells from peripheral blood	blood
50	chr6:149193200-149194600	Weak transcription	Fetal Thymus	thymus

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