Variant report

Variant	rs11965545
Chromosome Location	chr6:121364920-121364921
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs17082991	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17083056	0.89[AMR][1000 genomes]
rs2358164	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2358165	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4401700	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs57631141	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6929054	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73534245	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73534262	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7738482	0.86[EUR][1000 genomes]
rs7759675	0.82[EUR][1000 genomes]
rs7759684	0.86[EUR][1000 genomes]
rs7770082	0.89[AMR][1000 genomes]
rs908458	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9401352	0.86[EUR][1000 genomes]
rs951411	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023384	chr6:121235867-121683448	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv886591	chr6:121260089-121398535	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv886592	chr6:121260089-121425387	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv464037	chr6:121261915-121400981	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv604571	chr6:121261915-121400981	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv530527	chr6:121298528-121789855	ZNF genes & repeats Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
7	nsv886593	chr6:121362591-121414770	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	esv3337008	chr6:121363624-121370054	Enhancers Weak transcription Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121364000-121365000	Enhancers	Rectal Mucosa Donor 31	rectum
2	chr6:121364400-121365000	Flanking Active TSS	Pancreas	Pancrea
3	chr6:121364400-121365400	Enhancers	Liver	Liver
4	chr6:121364400-121365400	Active TSS	Pancreatic Islets	Pancreatic Islet
5	chr6:121364400-121365400	Weak transcription	Stomach Mucosa	stomach
6	chr6:121364600-121365000	Active TSS	Duodenum Mucosa	Duodenum
7	chr6:121364600-121365400	Enhancers	HepG2	liver
8	chr6:121364800-121365000	Active TSS	Fetal Intestine Small	intestine
9	chr6:121364800-121365400	Active TSS	Fetal Stomach	stomach
10	chr6:121364800-121365600	Weak transcription	Fetal Intestine Large	intestine
11	chr6:121364800-121369600	Weak transcription	Placenta	Placenta

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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