Variant report

Variant	rs908458
Chromosome Location	chr6:121272165-121272166
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11965545	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12200570	1.00[ASN][1000 genomes]
rs12201897	1.00[ASN][1000 genomes]
rs12208902	1.00[ASN][1000 genomes]
rs12210419	1.00[ASN][1000 genomes]
rs12211115	1.00[ASN][1000 genomes]
rs12211127	1.00[ASN][1000 genomes]
rs1538459	1.00[ASN][1000 genomes]
rs17082991	0.87[EUR][1000 genomes]
rs17630212	1.00[ASN][1000 genomes]
rs17630342	1.00[ASN][1000 genomes]
rs17697600	1.00[ASN][1000 genomes]
rs2358164	0.87[EUR][1000 genomes]
rs2358165	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35918375	1.00[ASN][1000 genomes]
rs4255015	1.00[ASN][1000 genomes]
rs4401700	0.87[EUR][1000 genomes]
rs57631141	0.90[EUR][1000 genomes]
rs62443046	1.00[ASN][1000 genomes]
rs6929054	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73534245	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73534262	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7738482	0.98[EUR][1000 genomes]
rs7759675	0.94[EUR][1000 genomes]
rs7759684	0.98[EUR][1000 genomes]
rs9401352	0.98[EUR][1000 genomes]
rs951411	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023384	chr6:121235867-121683448	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv886591	chr6:121260089-121398535	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv886592	chr6:121260089-121425387	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv464037	chr6:121261915-121400981	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv604571	chr6:121261915-121400981	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121271400-121272400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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