Variant report

Variant	rs11965594
Chromosome Location	chr6:140001209-140001210
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11969140	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11970069	0.96[EUR][1000 genomes]
rs3001016	0.82[CEU][hapmap]
rs58895829	0.96[EUR][1000 genomes]
rs6904272	1.00[EUR][1000 genomes]
rs6909896	1.00[EUR][1000 genomes]
rs73556042	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv516840	chr6:139960833-140053704	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140000200-140001400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr6:140000200-140001400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr6:140000200-140001400	Enhancers	Muscle Satellite Cultured Cells	--
4	chr6:140000200-140001400	Enhancers	Adipose Nuclei	Adipose
5	chr6:140000400-140001400	Enhancers	HepG2	liver
6	chr6:140000600-140001400	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr6:140000600-140001600	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr6:140000600-140002400	Enhancers	Fetal Heart	heart
9	chr6:140000800-140001400	Enhancers	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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