Variant report

Variant	rs3001016
Chromosome Location	chr6:140142561-140142562
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:139695107..139696860-chr6:140141240..140143122,2	K562	blood:
2	chr6:140137505..140139416-chr6:140141678..140144542,3	K562	blood:
3	chr6:140140156..140142876-chr6:140150125..140152606,2	K562	blood:

Variant related genes	Relation type
ENSG00000164442	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11963806	1.00[ASN][1000 genomes]
rs11965594	0.82[CEU][hapmap]
rs12110570	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs2144165	1.00[ASN][1000 genomes]
rs2179995	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2179996	1.00[ASN][1000 genomes]
rs2207334	1.00[ASN][1000 genomes]
rs3015438	1.00[CEU][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3918473	1.00[ASN][1000 genomes]
rs3946063	1.00[ASN][1000 genomes]
rs4403279	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6570382	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6570383	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6900161	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6900843	1.00[ASN][1000 genomes]
rs6912157	1.00[ASN][1000 genomes]
rs6917570	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6917808	1.00[ASN][1000 genomes]
rs6939887	1.00[ASN][1000 genomes]
rs72986790	1.00[ASN][1000 genomes]
rs7743495	1.00[ASN][1000 genomes]
rs7745714	1.00[ASN][1000 genomes]
rs7746560	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7750105	1.00[ASN][1000 genomes]
rs7761684	1.00[ASN][1000 genomes]
rs7762012	1.00[ASN][1000 genomes]
rs7768688	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs7775904	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs9376470	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9399296	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv830820	chr6:140059279-140255292	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
3	nsv1017015	chr6:140084137-140300565	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1019407	chr6:140087307-140304334	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1022881	chr6:140098646-140172570	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
6	nsv886692	chr6:140111650-140155090	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
7	nsv1018752	chr6:140127295-140144919	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
8	esv3419462	chr6:140142522-140142738	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140139200-140143400	Enhancers	NHDF-Ad	bronchial
2	chr6:140139400-140142600	Enhancers	Osteobl	bone
3	chr6:140140400-140142600	Enhancers	NHLF	lung
4	chr6:140141400-140145000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr6:140141800-140143200	Enhancers	HUVEC	blood vessel
6	chr6:140142000-140143000	Enhancers	Placenta Amnion	Placenta Amnion
7	chr6:140142200-140144400	Enhancers	K562	blood
8	chr6:140142200-140160800	Weak transcription	Aorta	Aorta
9	chr6:140142400-140142800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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