Variant report

Variant	rs7750105
Chromosome Location	chr6:140172490-140172491
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:140171085..140173859-chr6:140174869..140177839,3	K562	blood:

Variant related genes	Relation type
ENSG00000231426	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11963806	1.00[ASN][1000 genomes]
rs12110570	1.00[ASN][1000 genomes]
rs17811355	0.81[AMR][1000 genomes]
rs2144165	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2179995	0.82[TSI][hapmap];1.00[ASN][1000 genomes]
rs2179996	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2207334	1.00[CEU][hapmap];1.00[GIH][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3001016	1.00[ASN][1000 genomes]
rs3015438	1.00[ASN][1000 genomes]
rs3918473	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.87[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3946063	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4403279	1.00[ASN][1000 genomes]
rs4554334	0.81[AMR][1000 genomes]
rs4896490	0.81[AMR][1000 genomes]
rs4896491	1.00[ASW][hapmap];0.94[MEX][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes]
rs4896492	1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs55772636	0.81[AMR][1000 genomes]
rs6570382	1.00[ASN][1000 genomes]
rs6570383	0.82[TSI][hapmap];1.00[ASN][1000 genomes]
rs6900161	1.00[ASN][1000 genomes]
rs6900843	1.00[ASN][1000 genomes]
rs6912157	1.00[ASN][1000 genomes]
rs6917570	1.00[ASN][1000 genomes]
rs6917808	1.00[CEU][hapmap];0.87[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6939887	1.00[ASN][1000 genomes]
rs72986790	1.00[ASN][1000 genomes]
rs73778053	0.81[AMR][1000 genomes]
rs73778057	0.81[AMR][1000 genomes]
rs73778058	0.81[AMR][1000 genomes]
rs7743495	1.00[ASN][1000 genomes]
rs7745714	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7746560	1.00[ASN][1000 genomes]
rs7761684	1.00[ASN][1000 genomes]
rs7762012	1.00[ASN][1000 genomes]
rs7768688	1.00[ASN][1000 genomes]
rs7775904	1.00[ASN][1000 genomes]
rs9376470	1.00[ASN][1000 genomes]
rs9399296	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv830820	chr6:140059279-140255292	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
3	nsv1017015	chr6:140084137-140300565	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1019407	chr6:140087307-140304334	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1022881	chr6:140098646-140172570	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140168400-140174000	Weak transcription	Fetal Lung	lung
2	chr6:140168800-140173400	Weak transcription	Duodenum Mucosa	Duodenum
3	chr6:140168800-140177000	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr6:140169000-140177000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr6:140169200-140173400	Weak transcription	Rectal Smooth Muscle	rectum
6	chr6:140169600-140173400	Weak transcription	Colon Smooth Muscle	Colon
7	chr6:140172200-140175200	Enhancers	Rectal Mucosa Donor 31	rectum
8	chr6:140172200-140178800	Enhancers	Fetal Intestine Small	intestine
9	chr6:140172200-140179000	Enhancers	Fetal Intestine Large	intestine

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