Variant report

No.	Distal block	Cell Line	Cell type
1	chr6:140049643..140051966-chr6:140056396..140059312,2	K562	blood:
2	chr6:140055856..140059094-chr6:140083948..140086975,3	K562	blood:
3	chr6:139694073..139696025-chr6:140057280..140060113,2	K562	blood:

Variant related genes	Relation type
ENSG00000164442	Chromatin interaction

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11963806	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12110570	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2144165	1.00[ASN][1000 genomes]
rs2179995	1.00[ASN][1000 genomes]
rs2179996	1.00[ASN][1000 genomes]
rs2207334	1.00[ASN][1000 genomes]
rs3001016	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs3015438	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[ASN][1000 genomes]
rs3918473	1.00[ASN][1000 genomes]
rs3946063	1.00[ASN][1000 genomes]
rs4403279	1.00[ASN][1000 genomes]
rs6570382	1.00[ASN][1000 genomes]
rs6570383	1.00[ASN][1000 genomes]
rs6900161	1.00[ASN][1000 genomes]
rs6900843	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6912157	0.92[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6917570	1.00[ASN][1000 genomes]
rs6917808	1.00[ASN][1000 genomes]
rs6939887	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7743495	0.89[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7745714	1.00[ASN][1000 genomes]
rs7746560	1.00[ASN][1000 genomes]
rs7750105	1.00[ASN][1000 genomes]
rs7761684	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7762012	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7768688	1.00[CEU][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9376470	1.00[ASN][1000 genomes]
rs9399296	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv464065	chr6:140027836-140085873	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv604766	chr6:140027836-140085873	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140054200-140058000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr6:140054200-140059600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:140054400-140059600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr6:140054400-140059800	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr6:140054400-140059800	Weak transcription	NHDF-Ad	bronchial
6	chr6:140054800-140072000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr6:140055000-140057600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr6:140055000-140064600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr6:140057200-140058000	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr6:140057200-140058000	Enhancers	Monocytes-CD14+_RO01746	blood
11	chr6:140057400-140058000	Enhancers	GM12878-XiMat	blood

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