Variant report

No.	Distal block	Cell Line	Cell type
1	chr6:140016247..140019706-chr6:140025179..140028113,3	K562	blood:
2	chr6:139693240..139695789-chr6:140014920..140018610,3	K562	blood:
3	chr6:139694131..139695789-chr6:140016107..140019302,3	K562	blood:

Variant related genes	Relation type
ENSG00000164442	Chromatin interaction

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs12110570	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2144165	1.00[ASN][1000 genomes]
rs2179995	1.00[ASN][1000 genomes]
rs2179996	1.00[ASN][1000 genomes]
rs2207334	1.00[ASN][1000 genomes]
rs3001016	1.00[ASN][1000 genomes]
rs3015438	1.00[ASN][1000 genomes]
rs3918473	1.00[ASN][1000 genomes]
rs3946063	1.00[ASN][1000 genomes]
rs4403279	1.00[ASN][1000 genomes]
rs6570382	1.00[ASN][1000 genomes]
rs6570383	1.00[ASN][1000 genomes]
rs6900161	1.00[ASN][1000 genomes]
rs6900843	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6912157	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6917570	1.00[ASN][1000 genomes]
rs6917808	1.00[ASN][1000 genomes]
rs6939887	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7743495	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7745714	1.00[ASN][1000 genomes]
rs7746560	1.00[ASN][1000 genomes]
rs7750105	1.00[ASN][1000 genomes]
rs7761684	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7762012	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7768688	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7775904	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9376470	1.00[ASN][1000 genomes]
rs9399296	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv516840	chr6:139960833-140053704	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140012200-140016800	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr6:140015600-140017000	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr6:140015800-140019800	Weak transcription	Liver	Liver
4	chr6:140016000-140017400	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr6:140016200-140017200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr6:140016200-140017200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

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