Variant report

Variant	rs6939887
Chromosome Location	chr6:140077595-140077596
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:140077496..140081190-chr6:140083108..140086275,5	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11963806	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12110570	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2144165	1.00[ASN][1000 genomes]
rs2179995	1.00[ASN][1000 genomes]
rs2179996	1.00[ASN][1000 genomes]
rs2207334	1.00[ASN][1000 genomes]
rs3001016	1.00[ASN][1000 genomes]
rs3015438	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3918473	1.00[ASN][1000 genomes]
rs3946063	1.00[ASN][1000 genomes]
rs4403279	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6570382	1.00[ASN][1000 genomes]
rs6570383	1.00[ASN][1000 genomes]
rs6900161	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6900843	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6912157	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6917570	1.00[ASN][1000 genomes]
rs6917808	1.00[ASN][1000 genomes]
rs72986790	1.00[ASN][1000 genomes]
rs7743495	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7745714	1.00[ASN][1000 genomes]
rs7746560	1.00[ASN][1000 genomes]
rs7750105	1.00[ASN][1000 genomes]
rs7761684	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7762012	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7768688	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7775904	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9376470	1.00[ASN][1000 genomes]
rs9399296	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv464065	chr6:140027836-140085873	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv604766	chr6:140027836-140085873	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv830820	chr6:140059279-140255292	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140070200-140085200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr6:140071800-140079200	Enhancers	Osteobl	bone
3	chr6:140072400-140079200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr6:140073000-140089400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr6:140073400-140079200	Enhancers	Muscle Satellite Cultured Cells	--
6	chr6:140074000-140079400	Weak transcription	Aorta	Aorta
7	chr6:140074400-140078600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:140074800-140078200	Weak transcription	Psoas Muscle	Psoas
9	chr6:140075000-140083200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr6:140075000-140085400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr6:140075200-140083800	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr6:140075600-140081200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr6:140075800-140077600	Enhancers	Adipose Nuclei	Adipose
14	chr6:140075800-140077600	Enhancers	Fetal Intestine Large	intestine
15	chr6:140076000-140085200	Weak transcription	Left Ventricle	heart
16	chr6:140076200-140078200	Enhancers	HUVEC	blood vessel
17	chr6:140076200-140078800	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr6:140076400-140079200	Enhancers	NHDF-Ad	bronchial
19	chr6:140076400-140081800	Weak transcription	Right Atrium	heart
20	chr6:140076400-140082200	Weak transcription	K562	blood
21	chr6:140076400-140085000	Weak transcription	Fetal Muscle Leg	muscle
22	chr6:140076400-140085200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr6:140076600-140078800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr6:140076800-140077600	Enhancers	Skeletal Muscle Male	skeletal muscle
25	chr6:140076800-140077600	Enhancers	Skeletal Muscle Female	skeletal muscle
26	chr6:140076800-140077800	Weak transcription	HSMM	muscle
27	chr6:140076800-140078400	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr6:140076800-140078600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr6:140076800-140078800	Weak transcription	Monocytes-CD14+_RO01746	blood
30	chr6:140076800-140078800	Weak transcription	NHLF	lung
31	chr6:140076800-140079000	Weak transcription	Fetal Heart	heart
32	chr6:140076800-140079400	Weak transcription	A549	lung
33	chr6:140076800-140081800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr6:140076800-140083200	Weak transcription	Fetal Lung	lung
35	chr6:140076800-140083400	Weak transcription	HSMMtube	muscle
36	chr6:140076800-140085000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr6:140076800-140085200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr6:140077000-140079200	Weak transcription	Liver	Liver
39	chr6:140077000-140083400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr6:140077000-140085000	Weak transcription	Pancreatic Islets	Pancreatic Islet
41	chr6:140077000-140085800	Weak transcription	Fetal Kidney	kidney
42	chr6:140077200-140078400	Weak transcription	Primary monocytes fromperipheralblood	blood
43	chr6:140077200-140078800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr6:140077200-140085000	Weak transcription	Rectal Smooth Muscle	rectum
45	chr6:140077400-140078600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr6:140077400-140078800	Weak transcription	Colon Smooth Muscle	Colon
47	chr6:140077400-140081000	Weak transcription	Ovary	ovary
48	chr6:140077400-140085800	Weak transcription	Pancreas	Pancrea

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