Variant report

Variant	rs73778053
Chromosome Location	chr6:140160910-140160911
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:139694314..139696643-chr6:140160154..140162718,2	K562	blood:

Variant related genes	Relation type
ENSG00000164442	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs17811355	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2144165	0.81[AMR][1000 genomes]
rs2179996	0.81[AMR][1000 genomes]
rs2207334	0.81[AMR][1000 genomes]
rs3918473	0.81[AMR][1000 genomes]
rs3946063	0.81[AMR][1000 genomes]
rs4554334	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4896490	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4896491	0.98[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4896492	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4896493	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs55772636	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6917808	0.81[AMR][1000 genomes]
rs73778057	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73778058	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73778065	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7750105	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv830820	chr6:140059279-140255292	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
3	nsv1017015	chr6:140084137-140300565	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1019407	chr6:140087307-140304334	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1022881	chr6:140098646-140172570	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140151000-140161400	Weak transcription	Left Ventricle	heart
2	chr6:140160200-140161000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr6:140160200-140161400	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr6:140160200-140161800	Enhancers	Placenta	Placenta
5	chr6:140160200-140163600	Enhancers	Primary B cells from peripheral blood	blood
6	chr6:140160400-140164000	Enhancers	Primary B cells from cord blood	blood
7	chr6:140160600-140161000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr6:140160600-140161000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr6:140160600-140161200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
10	chr6:140160600-140161200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr6:140160600-140161400	Flanking Active TSS	Liver	Liver
12	chr6:140160800-140161000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr6:140160800-140161000	Flanking Active TSS	Primary hematopoietic stem cells	blood
14	chr6:140160800-140161000	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
15	chr6:140160800-140161000	Enhancers	A549	lung
16	chr6:140160800-140161000	Enhancers	Osteobl	bone
17	chr6:140160800-140161200	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr6:140160800-140161200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr6:140160800-140161200	Active TSS	Adipose Nuclei	Adipose
20	chr6:140160800-140161200	Enhancers	Aorta	Aorta
21	chr6:140160800-140161200	Active TSS	Brain Hippocampus Middle	brain
22	chr6:140160800-140161200	Active TSS	Colon Smooth Muscle	Colon
23	chr6:140160800-140161200	Active TSS	Duodenum Mucosa	Duodenum
24	chr6:140160800-140161200	Enhancers	Psoas Muscle	Psoas
25	chr6:140160800-140161200	Active TSS	Rectal Mucosa Donor 29	rectum
26	chr6:140160800-140161200	Active TSS	Rectal Mucosa Donor 31	rectum
27	chr6:140160800-140161200	Enhancers	Right Atrium	heart
28	chr6:140160800-140161200	Active TSS	Skeletal Muscle Female	skeletal muscle
29	chr6:140160800-140161200	Active TSS	Stomach Smooth Muscle	stomach
30	chr6:140160800-140161200	Active TSS	HepG2	liver
31	chr6:140160800-140161200	Flanking Active TSS	K562	blood
32	chr6:140160800-140161200	Flanking Active TSS	NHDF-Ad	bronchial
33	chr6:140160800-140161200	Active TSS	NHLF	lung
34	chr6:140160800-140161400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr6:140160800-140161400	Active TSS	Brain Substantia Nigra	brain
36	chr6:140160800-140161600	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
37	chr6:140160800-140161800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

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