Variant report

Variant	rs17811355
Chromosome Location	chr6:140168341-140168342
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs2144165	0.81[AMR][1000 genomes]
rs2179996	0.81[AMR][1000 genomes]
rs2207334	0.94[MEX][hapmap];0.81[AMR][1000 genomes]
rs3918473	0.94[MEX][hapmap];0.81[AMR][1000 genomes]
rs3946063	0.94[MEX][hapmap];0.81[AMR][1000 genomes]
rs4554334	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4896490	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4896491	1.00[CEU][hapmap];1.00[GIH][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4896492	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs55772636	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6917808	0.81[AMR][1000 genomes]
rs73778053	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73778057	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73778058	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73778065	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7750105	0.88[MEX][hapmap];0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv830820	chr6:140059279-140255292	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
3	nsv1017015	chr6:140084137-140300565	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1019407	chr6:140087307-140304334	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1022881	chr6:140098646-140172570	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140167000-140169000	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr6:140167200-140168600	Enhancers	Primary B cells from cord blood	blood
3	chr6:140167200-140168600	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr6:140167200-140168600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr6:140167200-140168600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
6	chr6:140167200-140169000	Enhancers	Primary hematopoietic stem cells	blood
7	chr6:140167400-140168400	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr6:140167400-140168400	Enhancers	Fetal Lung	lung
9	chr6:140167400-140168600	Enhancers	Primary B cells from peripheral blood	blood
10	chr6:140167400-140168600	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
11	chr6:140167400-140169600	Enhancers	Colon Smooth Muscle	Colon
12	chr6:140167600-140168800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr6:140167600-140168800	Enhancers	Liver	Liver
14	chr6:140167600-140169200	Enhancers	Fetal Heart	heart
15	chr6:140167800-140168400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr6:140167800-140168400	Enhancers	H9 Cell Line	embryonic stem cell
17	chr6:140167800-140168600	Flanking Active TSS	Fetal Kidney	kidney
18	chr6:140167800-140168600	Enhancers	Fetal Muscle Leg	muscle
19	chr6:140167800-140168600	Enhancers	Psoas Muscle	Psoas
20	chr6:140167800-140168800	Enhancers	H1 Cell Line	embryonic stem cell
21	chr6:140167800-140168800	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr6:140167800-140168800	Enhancers	HUES64 Cell Line	embryonic stem cell
23	chr6:140167800-140168800	Enhancers	iPS-15b Cell Line	embryonic stem cell
24	chr6:140167800-140168800	Enhancers	Skeletal Muscle Male	skeletal muscle
25	chr6:140167800-140169000	Enhancers	ES-I3 Cell Line	embryonic stem cell
26	chr6:140167800-140169000	Enhancers	HUES6 Cell Line	embryonic stem cell
27	chr6:140167800-140169000	Enhancers	iPS-18 Cell Line	embryonic stem cell
28	chr6:140167800-140169400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr6:140167800-140169600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr6:140168000-140168400	Flanking Active TSS	Fetal Intestine Large	intestine
31	chr6:140168000-140168600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr6:140168000-140168600	Weak transcription	Stomach Mucosa	stomach
33	chr6:140168000-140168600	Enhancers	Stomach Smooth Muscle	stomach
34	chr6:140168000-140169200	Enhancers	Rectal Smooth Muscle	rectum
35	chr6:140168200-140168400	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
36	chr6:140168200-140168400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
37	chr6:140168200-140168600	Flanking Active TSS	Duodenum Mucosa	Duodenum
38	chr6:140168200-140168800	Enhancers	iPS-20b Cell Line	embryonic stem cell
39	chr6:140168200-140168800	Enhancers	Adipose Nuclei	Adipose
40	chr6:140168200-140168800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
41	chr6:140168200-140169000	Enhancers	Sigmoid Colon	Sigmoid Colon
42	chr6:140168200-140169800	Enhancers	Fetal Intestine Small	intestine

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