Variant report

Variant	rs11965796
Chromosome Location	chr6:86073066-86073067
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs59195259	1.00[EUR][1000 genomes]
rs9444328	1.00[EUR][1000 genomes]
rs9450244	1.00[EUR][1000 genomes]
rs9450246	1.00[EUR][1000 genomes]
rs9450249	1.00[EUR][1000 genomes]
rs9450250	1.00[EUR][1000 genomes]
rs9450252	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9450253	1.00[EUR][1000 genomes]
rs9450254	1.00[EUR][1000 genomes]
rs9450255	1.00[EUR][1000 genomes]
rs9450259	1.00[EUR][1000 genomes]
rs9450296	1.00[EUR][1000 genomes]
rs9450298	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017418	chr6:85344786-86259540	Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Enhancers Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv538347	chr6:85344786-86259540	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv1022445	chr6:85972678-86392968	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
4	nsv538349	chr6:85972678-86392968	Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
5	nsv830721	chr6:85987644-86147414	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	esv3326486	chr6:86020165-86292456	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
7	nsv1019960	chr6:86023236-86136666	Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	esv3435075	chr6:86052235-86271910	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:86067600-86074400	Enhancers	NHDF-Ad	bronchial
2	chr6:86067800-86074400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:86069000-86074400	Enhancers	NHLF	lung
4	chr6:86069200-86073200	Enhancers	Muscle Satellite Cultured Cells	--
5	chr6:86069200-86073200	Enhancers	HMEC	breast
6	chr6:86069200-86074200	Enhancers	Osteobl	bone
7	chr6:86069200-86074400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr6:86069400-86073200	Enhancers	Hela-S3	cervix
9	chr6:86069400-86073200	Enhancers	NHEK	skin
10	chr6:86069600-86073200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr6:86070400-86073200	Enhancers	HUVEC	blood vessel
12	chr6:86070800-86073200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr6:86071600-86073400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr6:86071800-86074000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr6:86071800-86074000	Weak transcription	HSMM	muscle
16	chr6:86071800-86074400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr6:86072200-86073400	Enhancers	A549	lung
18	chr6:86072600-86074200	Weak transcription	Placenta	Placenta
19	chr6:86072800-86073800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr6:86072800-86073800	Weak transcription	NH-A	brain
21	chr6:86073000-86074000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr6:86073000-86074000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr6:86073000-86074000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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