Variant report

Variant	rs11966518
Chromosome Location	chr6:54148308-54148309
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs1150876	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs1150879	1.00[EUR][1000 genomes]
rs1150881	1.00[EUR][1000 genomes]
rs1150882	1.00[EUR][1000 genomes]
rs1150883	1.00[EUR][1000 genomes]
rs1150885	1.00[EUR][1000 genomes]
rs1280853	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs1280855	1.00[EUR][1000 genomes]
rs1280856	1.00[EUR][1000 genomes]
rs1280858	1.00[EUR][1000 genomes]
rs1280859	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs1280860	1.00[EUR][1000 genomes]
rs1280944	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs1290258	1.00[EUR][1000 genomes]
rs1298144	1.00[TSI][hapmap]
rs1298874	1.00[EUR][1000 genomes]
rs1340669	1.00[EUR][1000 genomes]
rs1614889	1.00[EUR][1000 genomes]
rs1775795	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs2754784	1.00[EUR][1000 genomes]
rs2754789	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs2754791	1.00[EUR][1000 genomes]
rs2754792	1.00[EUR][1000 genomes]
rs2754799	1.00[EUR][1000 genomes]
rs2754800	1.00[EUR][1000 genomes]
rs2754803	1.00[EUR][1000 genomes]
rs2754805	1.00[EUR][1000 genomes]
rs2754806	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs2754807	1.00[EUR][1000 genomes]
rs2754810	1.00[EUR][1000 genomes]
rs2754811	1.00[EUR][1000 genomes]
rs2792626	1.00[EUR][1000 genomes]
rs2792628	1.00[EUR][1000 genomes]
rs2792632	1.00[EUR][1000 genomes]
rs2792637	1.00[EUR][1000 genomes]
rs2792639	1.00[EUR][1000 genomes]
rs2792640	1.00[EUR][1000 genomes]
rs2792642	1.00[EUR][1000 genomes]
rs2792643	1.00[EUR][1000 genomes]
rs2792645	1.00[EUR][1000 genomes]
rs2792647	1.00[EUR][1000 genomes]
rs2792648	1.00[EUR][1000 genomes]
rs2792650	1.00[TSI][hapmap]
rs2792651	1.00[EUR][1000 genomes]
rs2792653	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs2792654	1.00[EUR][1000 genomes]
rs2792658	1.00[EUR][1000 genomes]
rs28878486	1.00[EUR][1000 genomes]
rs484196	1.00[EUR][1000 genomes]
rs494180	1.00[EUR][1000 genomes]
rs519777	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs526232	1.00[EUR][1000 genomes]
rs553883	1.00[EUR][1000 genomes]
rs554826	1.00[EUR][1000 genomes]
rs56843634	1.00[EUR][1000 genomes]
rs587260	1.00[EUR][1000 genomes]
rs58779855	1.00[EUR][1000 genomes]
rs59853271	1.00[EUR][1000 genomes]
rs603260	1.00[EUR][1000 genomes]
rs604566	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs61111674	1.00[EUR][1000 genomes]
rs631431	1.00[EUR][1000 genomes]
rs6458981	1.00[EUR][1000 genomes]
rs667378	1.00[EUR][1000 genomes]
rs6910818	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs695181	1.00[EUR][1000 genomes]
rs73741495	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067663	chr6:53796341-54449718	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv529158	chr6:53796341-54449718	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv885888	chr6:54132353-54266032	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54146000-54149600	Enhancers	Muscle Satellite Cultured Cells	--
2	chr6:54146000-54151600	Enhancers	NHDF-Ad	bronchial
3	chr6:54146400-54148600	Enhancers	NHLF	lung
4	chr6:54146400-54152200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr6:54146600-54148400	Enhancers	HSMM	muscle
6	chr6:54146600-54149000	Enhancers	Osteobl	bone
7	chr6:54147400-54150400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr6:54147400-54150400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr6:54147400-54150600	Weak transcription	NH-A	brain
10	chr6:54147400-54151000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr6:54147400-54151400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr6:54147600-54148600	Enhancers	Fetal Intestine Small	intestine
13	chr6:54147600-54149000	Enhancers	Fetal Intestine Large	intestine
14	chr6:54147600-54150200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr6:54147600-54150200	Weak transcription	NHEK	skin
16	chr6:54147600-54150800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr6:54148200-54148400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr6:54148200-54148400	Enhancers	HMEC	breast
19	chr6:54148200-54148600	Enhancers	Psoas Muscle	Psoas
20	chr6:54148200-54148800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr6:54148200-54150400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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