Variant report

Variant	rs1280856
Chromosome Location	chr6:54057236-54057237
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs1150876	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1150879	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1150881	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1150882	1.00[EUR][1000 genomes]
rs1150883	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1150885	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11966518	1.00[EUR][1000 genomes]
rs1280853	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1280855	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1280858	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1280859	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1280860	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1280944	1.00[EUR][1000 genomes]
rs1290258	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1292569	1.00[AMR][1000 genomes]
rs1298874	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1340669	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1417388	1.00[AMR][1000 genomes]
rs1614889	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1775795	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2754784	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2754789	1.00[EUR][1000 genomes]
rs2754791	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2754792	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2754796	1.00[AMR][1000 genomes]
rs2754799	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2754800	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2754801	1.00[AMR][1000 genomes]
rs2754803	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2754805	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2754806	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2754807	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2754810	1.00[EUR][1000 genomes]
rs2754811	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2792626	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2792628	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2792632	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2792637	1.00[EUR][1000 genomes]
rs2792639	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2792640	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2792642	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2792643	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2792645	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2792647	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2792648	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2792650	1.00[AMR][1000 genomes]
rs2792651	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2792653	1.00[EUR][1000 genomes]
rs2792654	1.00[EUR][1000 genomes]
rs2792658	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28878486	1.00[EUR][1000 genomes]
rs484196	1.00[EUR][1000 genomes]
rs494180	1.00[EUR][1000 genomes]
rs519777	1.00[EUR][1000 genomes]
rs526232	1.00[EUR][1000 genomes]
rs553883	1.00[EUR][1000 genomes]
rs554826	1.00[EUR][1000 genomes]
rs56843634	1.00[EUR][1000 genomes]
rs587260	1.00[EUR][1000 genomes]
rs58779855	1.00[EUR][1000 genomes]
rs59853271	1.00[EUR][1000 genomes]
rs603260	1.00[EUR][1000 genomes]
rs604566	1.00[EUR][1000 genomes]
rs61111674	1.00[EUR][1000 genomes]
rs631431	1.00[EUR][1000 genomes]
rs6458981	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs667378	1.00[EUR][1000 genomes]
rs6910818	1.00[EUR][1000 genomes]
rs695181	1.00[EUR][1000 genomes]
rs73741495	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067663	chr6:53796341-54449718	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv529158	chr6:53796341-54449718	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv603110	chr6:53885918-54103794	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1017633	chr6:53935336-54118476	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:53998000-54099200	Weak transcription	Psoas Muscle	Psoas
2	chr6:54045800-54069200	Weak transcription	Fetal Heart	heart
3	chr6:54047200-54069600	Weak transcription	Right Ventricle	heart
4	chr6:54047400-54069600	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr6:54051800-54057800	Weak transcription	Left Ventricle	heart
6	chr6:54054000-54057600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr6:54054000-54057800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr6:54054000-54058400	Weak transcription	HSMMtube	muscle
9	chr6:54054000-54058600	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr6:54054400-54058000	Weak transcription	HSMM	muscle
11	chr6:54054600-54057600	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr6:54055200-54069600	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr6:54056200-54057800	Enhancers	HUVEC	blood vessel
14	chr6:54056200-54059000	Enhancers	Adipose Nuclei	Adipose
15	chr6:54056600-54057800	Weak transcription	Fetal Lung	lung
16	chr6:54056600-54057800	Weak transcription	NHLF	lung

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