Variant report

Variant	rs1417388
Chromosome Location	chr6:54077771-54077772
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1150876	1.00[AMR][1000 genomes]
rs1150879	1.00[AMR][1000 genomes]
rs1150881	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1150883	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1150885	1.00[AMR][1000 genomes]
rs1280853	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1280855	1.00[AMR][1000 genomes]
rs1280856	1.00[AMR][1000 genomes]
rs1280858	1.00[AMR][1000 genomes]
rs1280859	1.00[AMR][1000 genomes]
rs1280860	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1290258	1.00[AMR][1000 genomes]
rs1292569	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1298874	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1340669	1.00[AMR][1000 genomes]
rs1614889	1.00[AMR][1000 genomes]
rs1775795	1.00[AMR][1000 genomes]
rs2754784	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2754791	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2754792	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2754796	1.00[AMR][1000 genomes]
rs2754799	1.00[AMR][1000 genomes]
rs2754800	1.00[AMR][1000 genomes]
rs2754801	1.00[AMR][1000 genomes]
rs2754803	1.00[AMR][1000 genomes]
rs2754805	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2754806	1.00[AMR][1000 genomes]
rs2754807	1.00[AMR][1000 genomes]
rs2754811	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2792626	1.00[AMR][1000 genomes]
rs2792628	1.00[AMR][1000 genomes]
rs2792632	1.00[AMR][1000 genomes]
rs2792637	0.87[AFR][1000 genomes]
rs2792639	1.00[AMR][1000 genomes]
rs2792640	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2792642	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2792643	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2792645	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2792647	1.00[AMR][1000 genomes]
rs2792648	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2792650	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2792651	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2792658	1.00[AMR][1000 genomes]
rs6458981	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067663	chr6:53796341-54449718	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv529158	chr6:53796341-54449718	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv603110	chr6:53885918-54103794	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1017633	chr6:53935336-54118476	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:53998000-54099200	Weak transcription	Psoas Muscle	Psoas
2	chr6:54058800-54101000	Weak transcription	Left Ventricle	heart
3	chr6:54070200-54098800	Weak transcription	Fetal Heart	heart
4	chr6:54070400-54095200	Weak transcription	Skeletal Muscle Female	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links