Variant report

Variant	rs11966568
Chromosome Location	chr6:34330994-34330995
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:34330571..34332725-chr6:34351916..34353996,2	K562	blood:
2	chr6:34330812..34332730-chr6:34334733..34336361,2	K562	blood:
3	chr6:34204139..34206583-chr6:34330883..34333553,2	K562	blood:

Variant related genes	Relation type
ENSG00000137309	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11963724	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16889678	1.00[JPT][hapmap]
rs3798539	1.00[CHB][hapmap]
rs6922119	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022844	chr6:34317219-35060519	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv538195	chr6:34317219-35060519	Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
3	nsv1034978	chr6:34327526-34362187	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:34309800-34337600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr6:34309800-34347200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr6:34315400-34351200	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr6:34316200-34333400	Weak transcription	Placenta	Placenta
5	chr6:34318200-34355800	Weak transcription	Brain Germinal Matrix	brain
6	chr6:34320400-34333400	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr6:34320400-34350400	Weak transcription	Esophagus	oesophagus
8	chr6:34320600-34331000	Weak transcription	Small Intestine	intestine
9	chr6:34322200-34333600	Weak transcription	Lung	lung
10	chr6:34325400-34331000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr6:34326400-34331600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr6:34327000-34351600	Weak transcription	Ovary	ovary
13	chr6:34327600-34332400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
14	chr6:34327600-34342200	Weak transcription	Fetal Kidney	kidney
15	chr6:34327800-34356400	Weak transcription	Hela-S3	cervix
16	chr6:34328000-34331000	Weak transcription	Pancreas	Pancrea
17	chr6:34328000-34337200	Weak transcription	Right Atrium	heart
18	chr6:34328000-34342000	Weak transcription	Fetal Brain Female	brain
19	chr6:34328000-34345400	Weak transcription	Fetal Stomach	stomach
20	chr6:34328000-34351200	Weak transcription	Gastric	stomach
21	chr6:34328400-34337800	Weak transcription	Fetal Muscle Trunk	muscle
22	chr6:34328600-34358000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr6:34328800-34333200	Weak transcription	HMEC	breast
24	chr6:34328800-34333800	Weak transcription	NH-A	brain
25	chr6:34328800-34337800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr6:34329000-34331600	Genic enhancers	K562	blood
27	chr6:34329000-34333400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr6:34329000-34333400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr6:34329000-34333400	Weak transcription	Right Ventricle	heart
30	chr6:34329000-34334400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr6:34329000-34337800	Weak transcription	NHEK	skin
32	chr6:34329200-34333400	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr6:34329600-34331200	Enhancers	Psoas Muscle	Psoas
34	chr6:34329600-34332600	Enhancers	Primary hematopoietic stem cells short term culture	blood
35	chr6:34329600-34345800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr6:34329800-34331400	Enhancers	Fetal Muscle Leg	muscle
37	chr6:34329800-34346400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr6:34329800-34351200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
39	chr6:34330000-34331000	Enhancers	Left Ventricle	heart
40	chr6:34330000-34331600	Enhancers	Primary hematopoietic stem cells	blood
41	chr6:34330000-34337200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
42	chr6:34330200-34331000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
43	chr6:34330200-34332400	Enhancers	Primary T helper cells fromperipheralblood	blood
44	chr6:34330400-34331000	Enhancers	Aorta	Aorta
45	chr6:34330400-34331200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
46	chr6:34330400-34331400	Enhancers	Fetal Thymus	thymus
47	chr6:34330400-34331600	Enhancers	ES-I3 Cell Line	embryonic stem cell
48	chr6:34330600-34331000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr6:34330600-34331000	Enhancers	Primary monocytes fromperipheralblood	blood
50	chr6:34330600-34331200	Enhancers	H1 Cell Line	embryonic stem cell

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