Variant report

Variant	rs6922119
Chromosome Location	chr6:34168464-34168465
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:34166849..34168716-chr6:34358759..34360503,2	MCF-7	breast:
2	chr6:34167057..34169701-chr6:34196937..34198784,2	K562	blood:
3	chr6:34156581..34160896-chr6:34162763..34169787,10	K562	blood:
4	chr6:34160739..34183165-chr6:34199874..34216980,124	K562	blood:
5	chr6:34167374..34170140-chr6:34179886..34181492,2	K562	blood:
6	chr6:34166525..34169280-chr6:34173395..34175146,2	MCF-7	breast:
7	chr6:34167669..34170205-chr6:34175412..34177855,2	K562	blood:
8	chr6:34167038..34169921-chr6:34215422..34218180,3	MCF-7	breast:
9	chr6:34167257..34169586-chr6:34191240..34193285,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000271231	Chromatin interaction
ENSG00000186577	Chromatin interaction
ENSG00000137309	Chromatin interaction
ENSG00000272325	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1011905	1.00[MEX][hapmap];0.94[TSI][hapmap];0.82[EUR][1000 genomes]
rs10807136	0.86[CEU][hapmap]
rs1187116	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11963724	1.00[CHB][hapmap]
rs11966568	1.00[CHB][hapmap]
rs1307272	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13214721	1.00[CHB][hapmap]
rs34410712	0.82[EUR][1000 genomes]
rs3798539	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs57863013	0.85[EUR][1000 genomes]
rs6940209	0.89[ASN][1000 genomes]
rs73744860	0.82[EUR][1000 genomes]
rs7775333	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462900	chr6:33932442-34195011	Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv602843	chr6:33932442-34195011	Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	nsv432881	chr6:34026522-34213822	Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
4	nsv462902	chr6:34056726-34195011	Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
5	nsv602862	chr6:34056726-34195011	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
6	nsv885781	chr6:34110257-34247661	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
7	nsv462903	chr6:34110257-34263743	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
8	nsv602863	chr6:34110257-34263743	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
9	esv1816380	chr6:34110880-34206718	Transcr. at gene 5' and 3' Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:34164600-34170000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr6:34164800-34169600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:34164800-34169600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr6:34164800-34169800	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr6:34164800-34169800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr6:34164800-34169800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr6:34164800-34169800	Weak transcription	Placenta	Placenta
8	chr6:34164800-34170000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr6:34164800-34170000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr6:34164800-34172200	Weak transcription	Right Atrium	heart
11	chr6:34165800-34169800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr6:34168200-34168600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr6:34168200-34168600	Enhancers	Lung	lung
14	chr6:34168200-34168600	Enhancers	GM12878-XiMat	blood
15	chr6:34168200-34168800	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr6:34168200-34168800	Enhancers	H1 Cell Line	embryonic stem cell
17	chr6:34168200-34168800	Enhancers	Pancreas	Pancrea
18	chr6:34168200-34168800	Enhancers	Hela-S3	cervix
19	chr6:34168200-34169000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr6:34168200-34169400	Enhancers	K562	blood
21	chr6:34168200-34170000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr6:34168200-34170000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr6:34168400-34168600	Enhancers	H9 Cell Line	embryonic stem cell
24	chr6:34168400-34168600	Enhancers	iPS-18 Cell Line	embryonic stem cell
25	chr6:34168400-34168600	Enhancers	Gastric	stomach
26	chr6:34168400-34168800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr6:34168400-34168800	Enhancers	NHDF-Ad	bronchial
28	chr6:34168400-34169600	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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