Variant report

Variant	rs7775333
Chromosome Location	chr6:34164517-34164518
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:20)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:20 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:34163985..34165499-chr6:34190823..34193399,2	MCF-7	breast:
2	chr6:34163768..34164762-chr6:34382837..34383708,3	K562	blood:
3	chr6:34156581..34160896-chr6:34162763..34169787,10	K562	blood:
4	chr6:34163666..34164628-chr6:34382739..34383690,6	MCF-7	breast:
5	chr6:34141696..34145706-chr6:34162843..34164569,3	K562	blood:
6	chr6:34162046..34166050-chr6:34204269..34209042,4	MCF-7	breast:
7	chr6:34161256..34167016-chr6:34189422..34193988,6	K562	blood:
8	chr6:34162021..34165758-chr6:34380623..34387316,6	K562	blood:
9	chr6:34160739..34183165-chr6:34199874..34216980,124	K562	blood:
10	chr6:34162948..34164566-chr6:34191693..34193324,2	MCF-7	breast:
11	chr6:34161815..34164629-chr6:34383451..34385385,2	MCF-7	breast:
12	chr6:34151306..34154507-chr6:34162844..34165811,3	K562	blood:
13	chr6:34163746..34164612-chr6:34205526..34206234,2	MCF-7	breast:
14	chr6:34163086..34165732-chr6:34214171..34216119,2	MCF-7	breast:
15	chr6:34163606..34165141-chr6:34381217..34383294,2	MCF-7	breast:
16	chr6:34157070..34159570-chr6:34163027..34164683,2	MCF-7	breast:
17	chr6:34163718..34164707-chr6:34577121..34577992,3	K562	blood:
18	chr6:34163737..34164672-chr6:35107392..35107985,2	K562	blood:
19	chr6:34163778..34165127-chr6:34216074..34216985,3	K562	blood:
20	chr6:34164046..34167260-chr6:34381691..34384552,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000186577	Chromatin interaction
ENSG00000137309	Chromatin interaction
ENSG00000271231	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1187116	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1307272	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6922119	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9348939	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462900	chr6:33932442-34195011	Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv602843	chr6:33932442-34195011	Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	nsv432881	chr6:34026522-34213822	Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
4	nsv462902	chr6:34056726-34195011	Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
5	nsv602862	chr6:34056726-34195011	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
6	nsv885781	chr6:34110257-34247661	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
7	nsv462903	chr6:34110257-34263743	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
8	nsv602863	chr6:34110257-34263743	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
9	esv1816380	chr6:34110880-34206718	Transcr. at gene 5' and 3' Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:34163400-34164800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr6:34163600-34164800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:34163600-34164800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:34163600-34164800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr6:34163800-34164600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
6	chr6:34163800-34164600	Active TSS	Brain Anterior Caudate	brain
7	chr6:34163800-34164600	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
8	chr6:34163800-34164600	Active TSS	Duodenum Smooth Muscle	Duodenum
9	chr6:34163800-34164600	Bivalent Enhancer	Fetal Brain Male	brain
10	chr6:34163800-34164600	Enhancers	Fetal Heart	heart
11	chr6:34163800-34164600	Flanking Active TSS	Spleen	Spleen
12	chr6:34163800-34164600	Active TSS	Hela-S3	cervix
13	chr6:34163800-34164600	Flanking Active TSS	K562	blood
14	chr6:34163800-34164600	Active TSS	NHLF	lung
15	chr6:34163800-34164800	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr6:34163800-34164800	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
17	chr6:34163800-34164800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr6:34163800-34164800	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr6:34163800-34164800	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr6:34163800-34164800	Flanking Active TSS	Adipose Nuclei	Adipose
21	chr6:34163800-34164800	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
22	chr6:34163800-34164800	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
23	chr6:34163800-34164800	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
24	chr6:34163800-34164800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
25	chr6:34163800-34164800	Flanking Active TSS	Stomach Smooth Muscle	stomach
26	chr6:34163800-34164800	Flanking Active TSS	GM12878-XiMat	blood
27	chr6:34163800-34164800	Flanking Bivalent TSS/Enh	HepG2	liver
28	chr6:34163800-34164800	Active TSS	Osteobl	bone
29	chr6:34163800-34165000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr6:34164000-34164600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
31	chr6:34164000-34164600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
32	chr6:34164000-34164600	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr6:34164000-34164600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
34	chr6:34164000-34164600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
35	chr6:34164000-34164600	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
36	chr6:34164000-34164600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr6:34164000-34164600	Active TSS	Psoas Muscle	Psoas
38	chr6:34164000-34164600	Flanking Active TSS	HMEC	breast
39	chr6:34164000-34164600	Active TSS	HSMMtube	muscle
40	chr6:34164000-34164600	Flanking Active TSS	HUVEC	blood vessel
41	chr6:34164000-34164800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr6:34164000-34164800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
43	chr6:34164000-34164800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
44	chr6:34164000-34164800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
45	chr6:34164000-34164800	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
46	chr6:34164000-34164800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr6:34164000-34164800	Flanking Active TSS	Brain Angular Gyrus	brain
48	chr6:34164000-34164800	Active TSS	Brain Hippocampus Middle	brain
49	chr6:34164000-34164800	Active TSS	Brain Substantia Nigra	brain
50	chr6:34164000-34164800	Flanking Active TSS	Duodenum Mucosa	Duodenum

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