Variant report

Variant	rs9348939
Chromosome Location	chr6:34341458-34341459
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:34339407..34341753-chr6:34346354..34347953,2	K562	blood:
2	chr6:34335584..34339226-chr6:34339692..34345370,5	K562	blood:
3	chr6:34339964..34342823-chr6:34350298..34352076,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs6910822	1.00[CHB][hapmap]
rs7775333	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022844	chr6:34317219-35060519	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv538195	chr6:34317219-35060519	Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
3	nsv1034978	chr6:34327526-34362187	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:34309800-34347200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr6:34315400-34351200	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr6:34318200-34355800	Weak transcription	Brain Germinal Matrix	brain
4	chr6:34320400-34350400	Weak transcription	Esophagus	oesophagus
5	chr6:34327000-34351600	Weak transcription	Ovary	ovary
6	chr6:34327600-34342200	Weak transcription	Fetal Kidney	kidney
7	chr6:34327800-34356400	Weak transcription	Hela-S3	cervix
8	chr6:34328000-34342000	Weak transcription	Fetal Brain Female	brain
9	chr6:34328000-34345400	Weak transcription	Fetal Stomach	stomach
10	chr6:34328000-34351200	Weak transcription	Gastric	stomach
11	chr6:34328600-34358000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr6:34329600-34345800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr6:34329800-34346400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr6:34329800-34351200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr6:34331000-34358400	Weak transcription	Aorta	Aorta
16	chr6:34331200-34342200	Weak transcription	Brain Angular Gyrus	brain
17	chr6:34331200-34344400	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr6:34331200-34346000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr6:34331200-34346200	Weak transcription	Brain Substantia Nigra	brain
20	chr6:34331200-34346200	Weak transcription	Stomach Mucosa	stomach
21	chr6:34331200-34351600	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr6:34331400-34342000	Weak transcription	Brain Cingulate Gyrus	brain
23	chr6:34331400-34345800	Weak transcription	Fetal Intestine Small	intestine
24	chr6:34331400-34346000	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr6:34331400-34348600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr6:34331400-34351400	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr6:34331400-34353400	Weak transcription	Small Intestine	intestine
28	chr6:34331400-34353600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr6:34331600-34342000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr6:34331600-34351400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr6:34331600-34353600	Weak transcription	Fetal Intestine Large	intestine
32	chr6:34331800-34342400	Weak transcription	Liver	Liver
33	chr6:34332000-34342000	Weak transcription	GM12878-XiMat	blood
34	chr6:34332000-34345600	Weak transcription	Primary T cells from cord blood	blood
35	chr6:34332600-34342200	Weak transcription	Fetal Heart	heart
36	chr6:34333600-34358000	Weak transcription	HMEC	breast
37	chr6:34334200-34350400	Weak transcription	Lung	lung
38	chr6:34334600-34345800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr6:34334600-34348600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr6:34334600-34350400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr6:34334800-34342000	Weak transcription	Osteobl	bone
42	chr6:34334800-34342200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr6:34334800-34345600	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr6:34334800-34345800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr6:34334800-34346400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr6:34335200-34354600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr6:34335600-34358800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr6:34337800-34359000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr6:34338000-34353600	Weak transcription	Primary T helper cells fromperipheralblood	blood
50	chr6:34338200-34346400	Weak transcription	A549	lung

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