Variant report

Variant	rs10807136
Chromosome Location	chr6:34178558-34178559
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:34160739..34183165-chr6:34199874..34216980,124	K562	blood:
2	chr6:34131628..34132318-chr6:34178038..34178559,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000137309	Chromatin interaction
ENSG00000186577	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10807139	0.89[ASN][1000 genomes]
rs10947487	0.89[ASN][1000 genomes]
rs1150777	1.00[CEU][hapmap]
rs11967909	0.83[JPT][hapmap]
rs1592269	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1759628	0.86[ASN][1000 genomes]
rs1759645	1.00[JPT][hapmap]
rs1776877	0.92[JPT][hapmap]
rs1776897	1.00[JPT][hapmap]
rs1776899	0.89[ASN][1000 genomes]
rs1776901	0.92[ASN][1000 genomes]
rs2780226	1.00[JPT][hapmap]
rs28673163	0.84[AMR][1000 genomes]
rs4711385	1.00[JPT][hapmap]
rs4713766	1.00[JPT][hapmap]
rs56348792	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6457765	0.85[EUR][1000 genomes]
rs6913361	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6922119	0.86[CEU][hapmap]
rs7742369	1.00[JPT][hapmap]
rs7749848	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7751671	0.91[ASN][1000 genomes]
rs7774122	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9469738	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462900	chr6:33932442-34195011	Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv602843	chr6:33932442-34195011	Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	nsv432881	chr6:34026522-34213822	Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
4	nsv462902	chr6:34056726-34195011	Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
5	nsv602862	chr6:34056726-34195011	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
6	nsv885781	chr6:34110257-34247661	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
7	nsv462903	chr6:34110257-34263743	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
8	nsv602863	chr6:34110257-34263743	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
9	esv1816380	chr6:34110880-34206718	Transcr. at gene 5' and 3' Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases
10	nsv965712	chr6:34177749-34192058	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
11	esv1925720	chr6:34178384-34179056	Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	esv3435999	chr6:34178408-34179051	Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
13	esv3347118	chr6:34178428-34179068	Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
14	esv3414304	chr6:34178469-34179032	Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
15	esv3513428	chr6:34178498-34179007	Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
16	esv3513429	chr6:34178498-34179007	Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:34176000-34180200	Weak transcription	K562	blood
2	chr6:34176200-34190800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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